View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_low_5 (Length: 536)
Name: NF1110_low_5
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 29 - 462
Target Start/End: Complemental strand, 42742544 - 42742114
Alignment:
| Q |
29 |
aagtcatatatagaaaatggattaagaatttaaaattaattataatgttaattgtgtgcctaaacttatttaattgtaatttttgtaaaggtattgtcaa |
128 |
Q |
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| T |
42742544 |
aagtgatatatagaaaatggattaagaatttaaaattaattataatgttaattgtgtgcctgaacttatttaattgtaatttttgtaaaggtattgtcaa |
42742445 |
T |
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| Q |
129 |
gagtgtgtgggttcattatagtacatgcaggttctttgtgtataaaagaatttgtttttgaaaaaagtcaaataacacaaagattgcataaaaatctatt |
228 |
Q |
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| T |
42742444 |
gagtgtgtgggttcat---agtacatgcaggttctttgtgtataaaagaatttgtttttgaaaaaagtcaaataacacgaagattgcataaaaatctctt |
42742348 |
T |
|
| Q |
229 |
attgttgagaatattaatcattccaaaaatacaacaatatgtaaacaagggtgagacaatgaggagagatcataataccttaactttgtccatgaagaac |
328 |
Q |
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| T |
42742347 |
atagttgagaatattaatcattccaaaaatacaacaatatgtaaacaagggtgagacaatgaggagagatcataataccttaactttgtccatgaagaac |
42742248 |
T |
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| Q |
329 |
tcagctgcaacaagtttcctctgttgtgcccaactttggccattggctctcaaaatgccattgccaagcattggcgcaagtttgttagttatataagaag |
428 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42742247 |
tcagctgcaacaagtttcctctgttgtgcccaactatggccattggctctcaaaatgccattgccaagcattggcgcaagtttgttagttatataagaag |
42742148 |
T |
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| Q |
429 |
gtttacccaaattcaaagtgatacactggttcat |
462 |
Q |
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| T |
42742147 |
gtttacccaaattcaaagtaatacactggttcat |
42742114 |
T |
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