View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_low_7 (Length: 441)
Name: NF1110_low_7
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 429
Target Start/End: Original strand, 5557596 - 5557991
Alignment:
| Q |
30 |
tcaaaatcatcaaacttttggaggagaagcatgcaattgttatcatatgcacgcaaaatctctagtttgagaaagataaagaaagctaaagttgtaaaaa |
129 |
Q |
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| T |
5557596 |
tcaacatcatcaaacttttggaggagaagcatgcaattgttatcatatgcatgcaaaatctctagcttgaaaaagataaagaaagctaaagttgtaaaaa |
5557695 |
T |
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| Q |
130 |
ttattatgcaagatgagtactcaatttttgcatgagtttttgcaactttagcttcatattatctttctcaagctggagcttttgttctaaagaagcaata |
229 |
Q |
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| T |
5557696 |
tcattacgtaaaatgagtactcaacttttgtatgagtttttgcaactttagcttcatattatctttctcaagctgaagtttttgttctaaagaagcgata |
5557795 |
T |
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| Q |
230 |
tgatcaaagttgaggcaggtatggaaagacattcgaactcttctagacttgctataatagttcttcctgggttgatttgtca------nnnnnnnnnnaa |
323 |
Q |
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||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5557796 |
tgatcaaagttgaggcaggtatgaaaaaacattcaaactcttctagacttgctataatagttcttcctgggttgatttgtcatttttttttatttttaaa |
5557895 |
T |
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| Q |
324 |
atgtaacttgaacaagtgttttgtcattaaactttttaatactttttaatattgatctaagttactttatattcatgaataactagtttatagtacttca |
423 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5557896 |
ttgtaacttgaacaagtgttttgtcatt----------atactttttaatattgatctaagttactttatattcatgaataactagtttatagtacttca |
5557985 |
T |
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