View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1110_low_8 (Length: 434)

Name: NF1110_low_8
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1110_low_8
NF1110_low_8
[»] chr4 (2 HSPs)
chr4 (98-365)||(49553161-49553428)
chr4 (308-360)||(17357051-17357103)
[»] chr2 (12 HSPs)
chr2 (313-365)||(14520122-14520174)
chr2 (313-365)||(14575201-14575253)
chr2 (313-356)||(15023636-15023679)
chr2 (308-356)||(14476149-14476197)
chr2 (313-363)||(14481324-14481374)
chr2 (311-345)||(14567247-14567281)
chr2 (313-341)||(13707181-13707209)
chr2 (313-345)||(14144911-14144943)
chr2 (313-345)||(14162262-14162294)
chr2 (313-345)||(14485239-14485271)
chr2 (316-356)||(14502183-14502223)
chr2 (313-345)||(14552210-14552242)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 98 - 365
Target Start/End: Original strand, 49553161 - 49553428
Alignment:
Q  98 actctttcaccgtctcttacctcatcaacaattacggtctctcccctcaaaccgcactcaatgtttctcgcaagctcactctctccgattcccaaaaacc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49553161 actctttcaccgtctcttacctcatcaacaattacggtctctcccctcaaaccgcactcaatgtttctcgcaagctcactctctccgatacccaaaaacc 49553260  T
Q  198 cgatttagttatcgccctcttcacaacccatggcttctccaacactcaaattcgtaatatcatcaaaagggaaccttgcttactcttatgcctcgacccc 297  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49553261 ggattcagttatcgccctcttcacaacccatggcttctccaacactcaaattcgtaatatcatcaaaagggaaccttgcttactcttatgcctcgacccc 49553360  T
Q  298 aacaagctacttttaccaaagtttcaatttttactctccaaaggtgctactacttctgatattattcg 365  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  49553361 aacaagatacttttaccaaagtttcaatttttactctccaaaggtgcttctacttctgatattgttcg 49553428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 17357103 - 17357051
Alignment:
Q  308 ttttaccaaagtttcaatttttactctccaaaggtgctactacttctgatatt 360  Q
    |||| ||||||||| ||||||| || ||||||||||||||| | |||||||||    
T  17357103 ttttgccaaagtttgaattttttctatccaaaggtgctacttcatctgatatt 17357051  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 14520122 - 14520174
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattattcg 365  Q
    ||||||||||||||||||||||||||||||||| || | ||||||||||||||    
T  14520122 ccaaagtttcaatttttactctccaaaggtgcttcttcctctgatattattcg 14520174  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 14575201 - 14575253
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattattcg 365  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||    
T  14575201 ccaaagtttcaatttttactctccaaaggtgcttctacctctgacattcttcg 14575253  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 15023636 - 15023679
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctga 356  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||    
T  15023636 ccaaagtttcaatttttactctccaaaggcgcttctacttctga 15023679  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 14476197 - 14476149
Alignment:
Q  308 ttttaccaaagtttcaatttttactctccaaaggtgctactacttctga 356  Q
    |||| ||||||||||||||||| ||||||||||||||| |||| |||||    
T  14476197 ttttgccaaagtttcaattttttctctccaaaggtgcttctacatctga 14476149  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 14481374 - 14481324
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattatt 363  Q
    ||||||||||||||||  ||||||||||||||| |||| ||||| ||||||    
T  14481374 ccaaagtttcaattttgtctctccaaaggtgcttctacctctgacattatt 14481324  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 345
Target Start/End: Original strand, 14567247 - 14567281
Alignment:
Q  311 taccaaagtttcaatttttactctccaaaggtgct 345  Q
    ||||||||||||||||||||||| |||||||||||    
T  14567247 taccaaagtttcaatttttactcgccaaaggtgct 14567281  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 13707209 - 13707181
Alignment:
Q  313 ccaaagtttcaatttttactctccaaagg 341  Q
    |||||||||||||||||||||||||||||    
T  13707209 ccaaagtttcaatttttactctccaaagg 13707181  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 14144911 - 14144943
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgct 345  Q
    ||||||||||||||||| |||||||||||||||    
T  14144911 ccaaagtttcaattttttctctccaaaggtgct 14144943  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 14162294 - 14162262
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgct 345  Q
    ||||||||||||||||| |||||||||||||||    
T  14162294 ccaaagtttcaattttttctctccaaaggtgct 14162262  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 14485239 - 14485271
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgct 345  Q
    ||||||||||||||||| |||||||||||||||    
T  14485239 ccaaagtttcaattttttctctccaaaggtgct 14485271  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 14502183 - 14502223
Alignment:
Q  316 aagtttcaatttttactctccaaaggtgctactacttctga 356  Q
    |||||||||||||| ||||||||||||||| |||| |||||    
T  14502183 aagtttcaattttttctctccaaaggtgcttctacctctga 14502223  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 14552210 - 14552242
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgct 345  Q
    ||||||||||||||||||||||||| |||||||    
T  14552210 ccaaagtttcaatttttactctccataggtgct 14552242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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