View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11110_high_1 (Length: 531)
Name: NF11110_high_1
Description: NF11110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11110_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 14 - 517
Target Start/End: Complemental strand, 37748748 - 37748245
Alignment:
| Q |
14 |
agaggagatgtttcaaacaaagctctacaaggagctgaagaagaaagaagtgatcaagagagaaacatggagatggaggggaaacagaatgaaaatcaag |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
37748748 |
agaggagctgtttcaaacaaagctctacaaggagctgaagaagaaagaagtgatcaagagagaaacatggagatagagggaaaacataatgaaaatcaag |
37748649 |
T |
|
| Q |
114 |
aaactggttcagaaaccgaagaagaagaacaaggttacaacgtttattcttgttcatatttaattttaagtattgttcagttttatgaagaatcgcaagg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37748648 |
aaactggttcagaaaccgaagaagaagaacaaggttaaaacgtttattcttgttcatatttaattttaagtattgttcagttttatgaagaattgcaagg |
37748549 |
T |
|
| Q |
214 |
aggttgcaatgttaaatggagaattcatgttacgatgtttcgttgttattcacttgagaattcagtcttggttgtgaggtttatgccggagaggctaaag |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37748548 |
aggttgcaatgttaaacaaagaattcatgttatgatgtttcgttgttattcacttgagaattcagtcttggttgtgaggtttatgccggagaggctaaag |
37748449 |
T |
|
| Q |
314 |
aatccaagaaagaggggttctatcactaccaagagagttagatcgaattatgcatcaaaaatggatatgggtgttgttgtttcaagtgatgaaggtgatt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37748448 |
aatccaagaaagaggggttctatcactaccaagagagatagatcgaattatgcataaaaaatggatatgggtgctgttgtttcaagtgatgaaggtgatt |
37748349 |
T |
|
| Q |
414 |
gtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgttcagtcatgtgaggaaaaagtgactgagttagcacaagaaggtgttga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37748348 |
gtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgttcagtcatatgaggaaaaagtgaccgagttagcacaagaaggtgttga |
37748249 |
T |
|
| Q |
514 |
tttt |
517 |
Q |
| |
|
|||| |
|
|
| T |
37748248 |
tttt |
37748245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 513
Target Start/End: Original strand, 43040084 - 43040588
Alignment:
| Q |
14 |
agaggagatgtttcaaacaaagctctacaaggagctgaagaagaaagaagtgatcaagagagaaacatggagatggaggggaaacagaatgaaaatcaag |
113 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
43040084 |
agaggagttgtttcaagcaaagctctacaaggagctgaagaagaaagaagtgatcaggagagaaacatggagatggaggggaaacataatgaaaatcacg |
43040183 |
T |
|
| Q |
114 |
aaactggttcagaaaccgaagaagaagaa------caaggttacaacgtttattcttgttcatatttaattttaagtattgttcagttttatgaagaatc |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43040184 |
aaactggttcagaaactgaagaagaagaagaagaacaaggttacaacgtttattcttgttcatatttaattttaagtattgttcagttttatgaagaatt |
43040283 |
T |
|
| Q |
208 |
gcaaggaggttgcaatgttaaatggagaattcatgttacgatgtttcgttgttattcacttgagaattcagtcttggttgtgaggtttatgccggagagg |
307 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43040284 |
gcaaggaggttgcaatgtttaacgacgaattcatgttatgatgtttcgttgttattcacttgagaattcagtcttggttgtgaggtttatgccggagagg |
43040383 |
T |
|
| Q |
308 |
ctaaagaatccaagaaagaggggttctatcactaccaagagagttagatcgaattatgcatcaaaaatggatatgggtgttgttgtttcaagtgatgaag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
43040384 |
-taaagaatccaagaaagaggggttctatcactatcaagagagttagatcgaattatgcatcaaaaatggatatgggtgctgttgtttcaagtgataaag |
43040482 |
T |
|
| Q |
408 |
gtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgttcagtcatgtgaggaaaaagtgactgagttagcacaagaagg |
507 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43040483 |
gtgattgtgtgattaagacgttcatgtggattacacgatcagctatgaaagcgtttgttcagtcatatgaggaaaaagtgactgagttagcacaagaagg |
43040582 |
T |
|
| Q |
508 |
tgttga |
513 |
Q |
| |
|
|||||| |
|
|
| T |
43040583 |
tgttga |
43040588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 69 - 512
Target Start/End: Complemental strand, 13108514 - 13108067
Alignment:
| Q |
69 |
aagagagaaacatggagatggaggggaaacagaatgaaaatcaagaaactggttcagaaaccgaagaagaagaacaaggttacaacgtttattcttgttc |
168 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||||||||||||||| || || || ||||||||| | ||||||||||||| ||| ||||||||| ||| |
|
|
| T |
13108514 |
aagagagaaacttagagatggaggggaaatagaatgaaaatcaagcaattgttttagaaaccgattatgaagaacaaggttccaaattttattcttattc |
13108415 |
T |
|
| Q |
169 |
atatttaattttaagtattgttcagttttatgaagaatcgcaaggaggttgcaatgttaaatggagaattcatgttacgatgtttcgttgttattcactt |
268 |
Q |
| |
|
|| |||||||||||||||| ||| || ||||||||| | | | ||| |||||| |||||| ||||||||||||| || |||||||||||| |||||| |
|
|
| T |
13108414 |
atgtttaattttaagtatttttcgattccatgaagaattgtgatggggtcgcaatgctaaatgaagaattcatgttaagaagtttcgttgttactcactt |
13108315 |
T |
|
| Q |
269 |
gagaattcagtcttggttgtgaggtttatgccggagaggctaaagaatccaagaaagagggg----ttctatcactaccaagagagttagatcgaattat |
364 |
Q |
| |
|
| |||||| ||||||||||||| |||| || ||| | || ||||||||||||||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
13108314 |
gtgaattcggtcttggttgtgatgtttgcgcaaagaaggttcaaaaatccaagaaagaggggctttttttatcactaacaagagagttagatcgaattat |
13108215 |
T |
|
| Q |
365 |
gcatcaaaaatggatatgggtgttgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttg |
464 |
Q |
| |
|
|||| || ||| |||||||||| | || ||||||| ||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
13108214 |
gcataaagaattgatatgggtgatattatttcaagcgatgatggtgatggtgtgataaagacgttcaagtggattacaagatcagctatgaaagaatttg |
13108115 |
T |
|
| Q |
465 |
ttcagtcatgtgaggaaaaagtgactgagttagcacaagaaggtgttg |
512 |
Q |
| |
|
|| ||||| |||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
13108114 |
ttgagtcagatgaggaaacaatgactaagttagcacaagaaggtgttg |
13108067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 137 - 509
Target Start/End: Complemental strand, 18801428 - 18801072
Alignment:
| Q |
137 |
gaagaacaaggttacaacgtttattcttgttcatatttaattttaagtattgttcagttttatgaagaatcgcaaggaggttgcaatgttaaatggagaa |
236 |
Q |
| |
|
|||||| |||||| | | ||||||||||| ||||||||||||| | ||||| ||| ||||||||||| | ||| | ||| ||||||||||| | |||| |
|
|
| T |
18801428 |
gaagaataaggttccgaagtttattcttgctcatatttaatttca-gtattattcggttttatgaaggtttgcattggggtcgcaatgttaaacgaagaa |
18801330 |
T |
|
| Q |
237 |
ttcatgttacgatgtttcgttgttattcacttgagaattcagtcttggttgtgaggtttatgccggagaggctaaagaatccaagaaagaggggttctat |
336 |
Q |
| |
|
||||||||| || |||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
18801329 |
ttcatgttatgaagtttcgttgttaatcacttgagaa------------------gtttatgctagagaggataaagaatccaagaaagaggggttttat |
18801248 |
T |
|
| Q |
337 |
cactaccaagagagttagatcgaattatgcatcaa-aaatg--gatatgggtgttgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaag |
433 |
Q |
| |
|
|||| | ||||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||| ||| |||| || || | ||||||| |
|
|
| T |
18801247 |
aactatcgtgagagttagatagaattgtgcatcaagaaatgatgatacgggtgttgttgtttcaagtgatgaaggcgatggtgtaataaatatgttcaag |
18801148 |
T |
|
| Q |
434 |
tggattacacaatcagctatgaaagcgtttgttcagtcatgtgaggaaaaagtgactgagttagcacaagaaggtg |
509 |
Q |
| |
|
| ||||||| || || ||||||| ||||||| |||| ||| |||| ||||||| |||| || ||||||||| |
|
|
| T |
18801147 |
tagattacatgattagttatgaaattgtttgttgagtccgttgaagaaagagtgacttggttaacataagaaggtg |
18801072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 43378848 - 43378741
Alignment:
| Q |
255 |
gttgttattcacttgagaattcagtcttggttgtgaggtttatgccggagaggctaaagaatccaagaaagaggggttctatcactaccaagagagttag |
354 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||| ||| | ||||| |||| | ||||||||| | ||||| |||| |||||| || ||| || |
|
|
| T |
43378848 |
gttgttgttcacttgagaattcgttcttggttgtgatgtttgtgcggaagaggttaaacactccaagaaatatgggttatatccctaccacgaaagtgag |
43378749 |
T |
|
| Q |
355 |
atcgaatt |
362 |
Q |
| |
|
|| ||||| |
|
|
| T |
43378748 |
attgaatt |
43378741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 71 - 466
Target Start/End: Original strand, 54016291 - 54016684
Alignment:
| Q |
71 |
gagagaaacatggagatggaggggaaacagaatgaaaatcaagaaactggttcagaaaccgaagaagaagaacaaggttacaacgtttattcttgttcat |
170 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||| ||| ||| | ||||||||| || | ||| || |||||| ||| |||||||||| ||||| |
|
|
| T |
54016291 |
gagagaaacgtagagatggaggggaaacaaaatgaac--caataaattaattcagaaacagattatgaacaataaggttccaaagtttattcttcttcat |
54016388 |
T |
|
| Q |
171 |
atttaattttaagtattgttcagttttatgaagaatcgcaaggaggttgcaatgttaaatggagaattcatgttacgatgtttcgttgttattcacttga |
270 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | | | || | |||||||| | ||||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
54016389 |
atttaattttaagtattgttcaattttatgaagaattgtgacggagtcacgatgttaaacgaagaattcatgttatgaagtttcgttgttgttcacttga |
54016488 |
T |
|
| Q |
271 |
gaattcagtcttggttgtgaggtttatgccggagaggctaaagaatccaagaaagaggggttctatcactaccaagagagttagatcgaattatgcatca |
370 |
Q |
| |
|
||||| |||||||| ||| ||||| || ||| |||||||| || ||| | ||||| |||||||||| | |||||||||||||| ||| ||||| |
|
|
| T |
54016489 |
aaattcgatcttggttatgatgtttaccatagaaaggttaaagaataaaa-aaataagggttttatcactaccgaaagagttagatcgaactatacatca |
54016587 |
T |
|
| Q |
371 |
aaaatggat-atgggtgttgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgtt |
466 |
Q |
| |
|
| || ||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
54016588 |
acgattgattataggtgttgttgtttcaagtaatgaaggtgattgtgtgataaagacgttcaagtggattacatgatcaactatgaaagcttttgtt |
54016684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 50614884 - 50614704
Alignment:
| Q |
22 |
tgtttcaaacaaagctctacaaggagctgaagaagaaagaagtgatcaagagagaaacatggagatggaggggaaacagaatgaaaatcaagaaactggt |
121 |
Q |
| |
|
|||||| |||||||| |||||||| ||| |||||||| |||||| ||||| ||||| ||||||||||||||||| ||| | | |||||||| || | |
|
|
| T |
50614884 |
tgtttcgaacaaagcataacaaggagttgacaaagaaagatgtgatcgggagagcaacatagagatggaggggaaacaaaataacagtcaagaaattgat |
50614785 |
T |
|
| Q |
122 |
tcagaaaccgaagaagaagaacaaggttacaacgtttattcttgttcatatttaattttaagtattgttcagttttatgaag |
203 |
Q |
| |
|
||||||||| | |||||||||| || | |||||||||||||||||||||||| | | || ||||||||||||||| |
|
|
| T |
50614784 |
caagaaaccgattatgaagaacaagtttctagtagttattcttgttcatatttaattttca-tctttttcagttttatgaag |
50614704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University