View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11110_high_10 (Length: 250)
Name: NF11110_high_10
Description: NF11110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11110_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 47110371 - 47110605
Alignment:
| Q |
1 |
atcagtacatatgtgaatttggcctaatctctttcaactgtaagttagattgatatgtaatcatttcggcacattcttactggactatgattaacaacat |
100 |
Q |
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| T |
47110371 |
atcagtacatatgtgaatttggcctaatctctttcaactgtaagttagattgatatgtaatcatttcggcacattcttactggactatgattaacaacat |
47110470 |
T |
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| Q |
101 |
aagtatctggtaagggacacctaagaagttagaagtcagaggtccgcgattcagcggaaccactaactaactaacactagcctatccnnnnnnnttattg |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47110471 |
aagtatctggtaagggacacctaagaagtt-------tgaggtccgcgattcagcggaaccactaactaactaacactagcctatccaaaaaaattattg |
47110563 |
T |
|
| Q |
201 |
gactatcatacttgaattattattgctgttgttatctctgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47110564 |
gactatcatacttgaattattattgctgttgttatttctgct |
47110605 |
T |
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