View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11110_high_2 (Length: 457)
Name: NF11110_high_2
Description: NF11110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11110_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 2018622 - 2019071
Alignment:
| Q |
1 |
caatccttacgcctcacttgtggctcccattttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcctttatagactgtcgttcaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018622 |
caatccttacgcctcacttgtggctcccattttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcctttatagactgtcgttcaaag |
2018721 |
T |
|
| Q |
101 |
gaattcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacacttgcaataatcttgtcacacttaagctagaaaatgttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2018722 |
gaattcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacacttgcaataatcttgtcacacttaagctagacaatgttac |
2018821 |
T |
|
| Q |
201 |
tttcaaagatggctcttcctatatcaattttccattactcaaatccctaaatttgaacgacgtcgtctttggaaaccgtgctaacatgttggacnnnnnn |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
2018822 |
tttcaaagatggctcttcctatatcaattttccattactcaaatcccttaatttgaacgacgtcgtctttggaaatcgtgctaacatgtttgactttttt |
2018921 |
T |
|
| Q |
301 |
ngcggatgtcccaatgttgaagatgtagaagtgacttcactatcaatagttaatagtcgcattcctcagccaccagaagagggggttgaagccttaccaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018922 |
tgcggatgtcccaatgttgaagatgtagaagtgacatcactatcaatagttaatagtcgcattcctcagccaccagaagagggggttgaagccttaccaa |
2019021 |
T |
|
| Q |
401 |
agttggtcagagcaaaaatttcagaattatatagcatgttacctttgctt |
450 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2019022 |
agttggtcagagcaaaaatttcagaattacatagcatgttacctttgctt |
2019071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University