View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11110_high_3 (Length: 380)
Name: NF11110_high_3
Description: NF11110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11110_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 43602104 - 43601739
Alignment:
| Q |
1 |
ctttaattaatcagtaagaaacaaagcatccaaagccaatacatttgtcaccaaatttttcgtccctggttaagttaagtggataacaattctataaatt |
100 |
Q |
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| T |
43602104 |
ctttaattaatcagtaagaatcaaagcatccaaagccaatacatgt-tcaccaaatttttctaccctggttaagttaagtggataacgattctataaatt |
43602006 |
T |
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| Q |
101 |
aatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtg |
200 |
Q |
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| T |
43602005 |
aatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtg |
43601906 |
T |
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| Q |
201 |
cagaaataattttcataatttgaagatatcatatcaattggagacataattctcagttccctttcagttgtactcagtctagcatatgcccagatttata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43601905 |
cagaaataattttcataatttgaagatatcatatcaattggagacataattctcagttccctttcagttgtactcagtctagcatatgcccagatttata |
43601806 |
T |
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| Q |
301 |
tcagcatttgccaattgccattgcaacttcgcacaaagcatcattaaaattataataaccacaggtt |
367 |
Q |
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| T |
43601805 |
gcagcatttgccaattgccaatgcaacttcgcacaaagcatcattaaaattataataaccacaggtt |
43601739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 22436220 - 22436340
Alignment:
| Q |
112 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataatt |
211 |
Q |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaatcatt |
22436319 |
T |
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| Q |
212 |
ttcataatttgaagatatcat |
232 |
Q |
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|||||||||| |||||||||| |
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| T |
22436320 |
ttcataattttaagatatcat |
22436340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 22239084 - 22239135
Alignment:
| Q |
181 |
tgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcat |
232 |
Q |
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| T |
22239084 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
22239135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 37560602 - 37560653
Alignment:
| Q |
181 |
tgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcat |
232 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37560602 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
37560653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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