View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11110_high_4 (Length: 366)
Name: NF11110_high_4
Description: NF11110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11110_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 11557591 - 11557939
Alignment:
| Q |
1 |
acaggagggactaaagagaggatgacacgtgaggagaagctagagaaaaagtgacggacgtgacggagagaggaacggtgtgtgacccagtttgtgtggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557591 |
acaggagggactaaagagaggatgacacgtgaggagaagctagagaaaaagtgacgcacgtgacggagagaggaacggtgtgtgacccagtttgtgtggt |
11557690 |
T |
|
| Q |
101 |
tgtagagtgttctgnnnnnnngcattcctcgttcttggttttggtctgcccagtctgggattgtacggaggagggtgattatggtttttattggagtggg |
200 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557691 |
tgtagagtgttctgtttttttgcattcctcgttcttggttttggtctgcccagtctgggattgtacggaggagggtgattatggtttttattggagtggg |
11557790 |
T |
|
| Q |
201 |
gggaggtgtggaagaacattttaggggggtgtgtttgtaggatttggaatatggttgaagaattagttgttggagtaggtgtgagtggcattttggagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11557791 |
gggaggtgtggaagaacattttaggggggtgtgtttgtaggatttggaatatggttgaagaattagttgttggagtaggtgtgagtggcattttggggtg |
11557890 |
T |
|
| Q |
301 |
aattgggaagttaggtttgtgagtttgatttggttattgggaggatggt |
349 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557891 |
aattgggaagttaggtttgtgagtttgatttggttattgggaggatggt |
11557939 |
T |
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