View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11110_low_12 (Length: 245)
Name: NF11110_low_12
Description: NF11110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11110_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 10894665 - 10894864
Alignment:
| Q |
42 |
gtattagaggcaaaagtattatagtttataacttgttcatnnnnnnnnnn--gcaaggcattgttttcttttgaaaatatgatatcttttgtatattttt |
139 |
Q |
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| T |
10894665 |
gtattagaggcaaaaatattatagtttataacttgttcataaaaaaaaaaaagcaaggcattgtttttttttgaaaatatgagatcttttgtatattttt |
10894764 |
T |
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| Q |
140 |
tcttgtcaagtagtctagtggttggactcacctatcttaagtgtggagaagtggagaattcggactataaacctcgatccctacatattattgcctttgc |
239 |
Q |
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| T |
10894765 |
tcttgttaagtagtctaatggttggactcacctatcttaagtgtggagaagtggagaattcggactataaatctcgatccctgtatattattgtctttgc |
10894864 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 43405981 - 43406046
Alignment:
| Q |
133 |
tattttttcttgtcaagtagtctagtggttggactcacctatcttaagtgtggagaagtggagaat |
198 |
Q |
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| T |
43405981 |
tatttttttttgtcaattagtctagtggttagactcacacacattatgtgtggagaagtggagaat |
43406046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 31068872 - 31068940
Alignment:
| Q |
135 |
ttttttcttgtcaagtagtctagtggttggactcacctatcttaagtgtggagaagtggagaattcgga |
203 |
Q |
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| T |
31068872 |
tttttttttgtcaaatagtctagtggttagattcacacacattaagtgtggagaagtggggaatccgga |
31068940 |
T |
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