View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11110_low_6 (Length: 316)
Name: NF11110_low_6
Description: NF11110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11110_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 18082373 - 18082552
Alignment:
| Q |
1 |
tgtcctatctcagtagggaacaataaccgtatattcttcagggaaaaagattacgatgatctaggctggttagacttaagtatccaaagagttcatgaaa |
100 |
Q |
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| T |
18082373 |
tgtcctatctcagtagggaacaagaaccgtatattcttcaggaaagaagattc---tgagctaggctggtttgatttaagtacccaaagagttgaggtaa |
18082469 |
T |
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| Q |
101 |
ttgaaggtaatggagagttattatgtcagcacatggtaattttcaaggaaaaatttcttccttttcctaggaatgaataattt |
183 |
Q |
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| T |
18082470 |
ttggagttaacggagagtcattttgttcgcacatggtaatctataaggaaaatcctcttccttttccgaggaatgaataattt |
18082552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 18082610 - 18082688
Alignment:
| Q |
205 |
ttatggagttatttagaaactgtagttttgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat |
283 |
Q |
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| T |
18082610 |
ttatgaagttgtttagaaactgtagttttgtatgtgtggcagatgaacatgtgtctaattccagagttctatactccat |
18082688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 18096790 - 18096969
Alignment:
| Q |
1 |
tgtcctatctcagtagggaacaataaccgtatattcttcagggaaaaagattacgatgatctaggctggttagacttaagtatccaaagagttcatgaaa |
100 |
Q |
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| T |
18096790 |
tgtcctatctcagtagggaacaagaaccgtatatttttcagggaagaagatt---ctgagctaggctggctagatttaagtacccaaagggttgaaagat |
18096886 |
T |
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| Q |
101 |
ttgaaggtaatggagagttattatgtcagcacatggtaattttcaaggaaaaatttcttccttttcctaggaatgaataattt |
183 |
Q |
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| T |
18096887 |
ttgaagttcaaggcaagtcattttgtacgtacatggtaatctatcaggaaaatcttcttccttttccaaggaatgaataattt |
18096969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 18139461 - 18139282
Alignment:
| Q |
1 |
tgtcctatctcagtagggaacaataaccgtatattcttcagggaaaaagattacgatgatctaggctggttagacttaagtatccaaagagttcatgaaa |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||| | || ||||||| |||||| ||| | || |
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| T |
18139461 |
tgtcctatctcagtagggaacaagaaccgtatattcttcagggaagaagat---cttgagctaggctggcttgatttaagtacccaaagggttgaaagaa |
18139365 |
T |
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| Q |
101 |
ttgaaggtaatggagagttattatgtcagcacatggtaattttcaaggaaaaatttcttccttttcctaggaatgaataattt |
183 |
Q |
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| T |
18139364 |
ttgaagttcaaggcgattcattttgtacgcacatggcaatctataaggagaatcttcttccttttccaaggaatgaataattt |
18139282 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 37875737 - 37875787
Alignment:
| Q |
233 |
tgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37875737 |
tgtatgtgtggcagctgcacatgtgactagttccagagttgtatactccat |
37875787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 23895947 - 23895894
Alignment:
| Q |
230 |
ttttgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat |
283 |
Q |
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| T |
23895947 |
tttngtatgtgtggcagctgcacatgtgactagttccagagttgtatactccat |
23895894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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