View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11110_low_7 (Length: 310)
Name: NF11110_low_7
Description: NF11110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11110_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 10894536 - 10894244
Alignment:
| Q |
1 |
aatagcactactgataaacaaacctaaaaaaggtcataacatacaacgcaaattaactctgcaaactattttttctcaaaaatgaccaagtggcagtctc |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10894536 |
aatagcactattgataaacaaacctaaaaaaggtcataacatacaacacaaattaactctgcaaactattttttctcaaaaatgaccaagtggtagtctc |
10894437 |
T |
|
| Q |
101 |
aataaacaactaaatttattatttttgttg-aaatgtaatgactcatatagtaaacaacttaaatcatattaagaaattagtcaatagcccttacaactt |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10894436 |
aataaacaactaaatttattatttttgttggaaatgtaatgactcatatagtaaacaacttaaatcatattaagaaattagtcaatagcccttacaactt |
10894337 |
T |
|
| Q |
200 |
gactgaacgattacaaaagagaagcattttagaaacgtatcggacattggtgaatgtatacnnnnnnnnagggagttggtgaatgtatacttt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10894336 |
gactgaacgattacaaaagagaagcattttagaaacctatcagacattggtgaatgtatacttttttttagggagttggtgaatgtatacttt |
10894244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 35113440 - 35113382
Alignment:
| Q |
106 |
acaactaaatttattatttttgttgaaatgtaatgactcatatagtaaacaacttaaat |
164 |
Q |
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|||||||||||||||||||||||||| ||| ||| || | | |||||||||||||||| |
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| T |
35113440 |
acaactaaatttattatttttgttgagatggaattacgtaaaaagtaaacaacttaaat |
35113382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 11315839 - 11315888
Alignment:
| Q |
71 |
ttttctcaaaaatgaccaagtggcagtctcaataaacaactaaatttatt |
120 |
Q |
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||||||||||| |||||||| || |||||||||||||||||||||||| |
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| T |
11315839 |
ttttctcaaaattgaccaagctccaatctcaataaacaactaaatttatt |
11315888 |
T |
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