View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11111_high_2 (Length: 584)

Name: NF11111_high_2
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11111_high_2
NF11111_high_2
[»] chr5 (18 HSPs)
chr5 (16-579)||(24562074-24562637)
chr5 (16-579)||(24603109-24603671)
chr5 (64-226)||(24707788-24707950)
chr5 (64-226)||(24753551-24753713)
chr5 (64-218)||(24832775-24832929)
chr5 (64-226)||(24740782-24740944)
chr5 (64-226)||(24671013-24671174)
chr5 (109-217)||(17445185-17445293)
chr5 (17-61)||(24671201-24671245)
chr5 (17-61)||(24707977-24708021)
chr5 (17-61)||(24740971-24741015)
chr5 (17-61)||(24753740-24753784)
chr5 (17-58)||(24832704-24832745)
chr5 (393-462)||(24833114-24833183)
chr5 (202-334)||(6056483-6056615)
chr5 (362-464)||(6056372-6056474)
chr5 (135-225)||(14136605-14136695)
chr5 (391-463)||(17444931-17445003)
[»] chr4 (14 HSPs)
chr4 (113-461)||(20874458-20874806)
chr4 (190-464)||(18558015-18558288)
chr4 (188-463)||(8807289-8807565)
chr4 (64-218)||(11555180-11555332)
chr4 (63-218)||(12228193-12228347)
chr4 (63-218)||(16285832-16285985)
chr4 (64-218)||(17334873-17335027)
chr4 (17-61)||(11555359-11555403)
chr4 (18-61)||(9563745-9563788)
chr4 (391-461)||(16286170-16286240)
chr4 (16-61)||(12228373-12228418)
chr4 (391-461)||(12227939-12228009)
chr4 (16-61)||(17335054-17335099)
chr4 (17-57)||(16285762-16285802)
[»] chr3 (24 HSPs)
chr3 (191-463)||(27871633-27871904)
chr3 (64-217)||(14482362-14482515)
chr3 (66-218)||(13927784-13927936)
chr3 (63-192)||(17782184-17782313)
chr3 (63-192)||(19090811-19090940)
chr3 (64-215)||(4713610-4713760)
chr3 (64-214)||(14055838-14055987)
chr3 (64-217)||(13929520-13929671)
chr3 (17-61)||(14063166-14063210)
chr3 (394-463)||(14482702-14482771)
chr3 (16-61)||(4713538-4713583)
chr3 (394-463)||(4713956-4714025)
chr3 (394-463)||(14063509-14063578)
chr3 (394-463)||(16967408-16967477)
chr3 (17-61)||(13927711-13927755)
chr3 (17-61)||(13929449-13929493)
chr3 (17-61)||(17782339-17782383)
chr3 (17-61)||(19090966-19091010)
chr3 (16-61)||(14055766-14055811)
chr3 (16-56)||(16613843-16613883)
chr3 (16-56)||(22045370-22045410)
chr3 (185-215)||(14063297-14063327)
chr3 (394-463)||(14056170-14056239)
chr3 (17-58)||(14482291-14482332)
[»] chr6 (13 HSPs)
chr6 (202-463)||(19548451-19548712)
chr6 (189-464)||(9189856-9190128)
chr6 (64-226)||(14964769-14964930)
chr6 (64-218)||(10907578-10907732)
chr6 (105-218)||(10642153-10642266)
chr6 (391-463)||(10642450-10642522)
chr6 (391-463)||(10907907-10907979)
chr6 (16-61)||(10907506-10907551)
chr6 (391-463)||(976892-976964)
chr6 (17-61)||(10642041-10642085)
chr6 (17-61)||(20147458-20147502)
chr6 (17-61)||(22185326-22185370)
chr6 (391-456)||(14964527-14964592)
[»] scaffold0094 (1 HSPs)
scaffold0094 (190-465)||(5804-6077)
[»] chr2 (16 HSPs)
chr2 (190-463)||(18988507-18988779)
chr2 (275-438)||(12132521-12132685)
chr2 (187-463)||(16857787-16858064)
chr2 (64-217)||(44587199-44587352)
chr2 (64-218)||(24785883-24786037)
chr2 (73-215)||(23661618-23661759)
chr2 (16-61)||(23661537-23661582)
chr2 (391-463)||(23661949-23662021)
chr2 (391-463)||(24725567-24725639)
chr2 (391-463)||(24785638-24785710)
chr2 (17-61)||(24786064-24786108)
chr2 (17-61)||(44587128-44587172)
chr2 (391-461)||(44587537-44587607)
chr2 (410-463)||(20594529-20594582)
chr2 (16-53)||(27470847-27470884)
chr2 (391-464)||(32253198-32253271)
[»] chr7 (20 HSPs)
chr7 (64-218)||(22615493-22615647)
chr7 (64-215)||(9079502-9079652)
chr7 (63-211)||(37946613-37946761)
chr7 (71-215)||(48375956-48376099)
chr7 (71-215)||(16059706-16059849)
chr7 (64-167)||(13486551-13486654)
chr7 (163-464)||(6899944-6900245)
chr7 (391-463)||(22615830-22615902)
chr7 (64-215)||(4532510-4532661)
chr7 (391-462)||(13486874-13486945)
chr7 (17-61)||(22615422-22615466)
chr7 (17-61)||(16059883-16059927)
chr7 (394-463)||(9079251-9079320)
chr7 (16-61)||(48376133-48376178)
chr7 (17-57)||(20025333-20025373)
chr7 (394-465)||(48375700-48375771)
chr7 (16-61)||(9079679-9079724)
chr7 (185-218)||(13486656-13486689)
chr7 (391-464)||(37946950-37947023)
chr7 (15-61)||(37946541-37946587)
[»] scaffold0290 (1 HSPs)
scaffold0290 (190-333)||(15208-15350)
[»] chr8 (2 HSPs)
chr8 (64-217)||(24505318-24505471)
chr8 (16-61)||(24505497-24505542)
[»] scaffold0145 (3 HSPs)
scaffold0145 (63-218)||(11731-11884)
scaffold0145 (391-461)||(11476-11546)
scaffold0145 (17-57)||(11914-11954)
[»] chr1 (4 HSPs)
chr1 (106-215)||(51659509-51659617)
chr1 (64-225)||(1567492-1567652)
chr1 (17-61)||(51659396-51659440)
chr1 (18-61)||(1567422-1567465)
[»] scaffold0218 (2 HSPs)
scaffold0218 (71-215)||(13533-13676)
scaffold0218 (16-61)||(13710-13755)
[»] scaffold0003 (3 HSPs)
scaffold0003 (71-215)||(129944-130087)
scaffold0003 (16-61)||(130121-130166)
scaffold0003 (394-463)||(129689-129758)
[»] scaffold0063 (3 HSPs)
scaffold0063 (71-215)||(29077-29219)
scaffold0063 (16-61)||(28998-29043)
scaffold0063 (394-461)||(29403-29470)
[»] scaffold0601 (1 HSPs)
scaffold0601 (17-58)||(5574-5615)
[»] scaffold0725 (1 HSPs)
scaffold0725 (64-209)||(5247-5392)
[»] scaffold0239 (1 HSPs)
scaffold0239 (16-56)||(21880-21920)


Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 16 - 579
Target Start/End: Complemental strand, 24562637 - 24562074
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttatttaatgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||    
T  24562637 cttttccctattattatgttatggcaggatttctcaccccttatttaatgtactttgagtagagatactcaggttgctgaggagtagcagtgggacgttt 24562538  T
Q  116 tagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24562537 tagaaggtggagacgatgagatgccctccgtttagttatgttgtttggtagttgaatatgaatgtagtcgctacgagctctgatattgtaacactagggt 24562438  T
Q  216 tggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcgaacgacaagagaaatttttattaatga 315  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  24562437 tggagttgacgttgaatttatttatcgttaagtttaaatcttgagaactgttgttatttttattttgatgtcgaacgacaagagaaatttttattaatga 24562338  T
Q  316 gatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgtgaagttttgtaacatcttaaatattaa 415  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24562337 gatcagatgattgttttccattgttgaaattattatttaaaaggaaaatttatgctaatatgtgaaatcatgtgaagttttgtaacatcctaaatattaa 24562238  T
Q  416 atttatttttattatctaataattatcgttgggaaatagggtgttacaatgacattttctctcaaaccttgtttcttctctcaaattctacttacctttg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  24562237 atttatttttattatctaataattatcgttgggaaatagggtgttacaatgactttttctctcaaaccttgtttcttctctcaaattctacctgcctttg 24562138  T
Q  516 ctaattttggatggacctcctctattcctttataaaccctaaatccaatgctactctctgcttc 579  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||    
T  24562137 ctaattttggatggacctgctctattcctttataaaccctaaacccaatgctactatttgcttc 24562074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 579
Target Start/End: Complemental strand, 24603671 - 24603109
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttatttaatgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||    
T  24603671 cttttccctattattatgttatggcaggatttctcaccccttatttaatgtactttgagtagagatactcaggttgctgaggagtagcagtgggacgttt 24603572  T
Q  116 tagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24603571 tagaaggtggagacgatgagatgccctccgtttagttatgttgtttggtagttgaatatgaatgtagtcgctacgagctctgatattgtaacactagggt 24603472  T
Q  216 tggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcgaacgacaagagaaatttttattaatga 315  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  24603471 tggagttgacgttgaatttatttatcgttaagtttaaatcttgagaactgttgttatttttattttgatgtcgaacgacaagagaaatttttattaatga 24603372  T
Q  316 gatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgtgaagttttgtaacatcttaaatattaa 415  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24603371 gatcagatgattgttttccattgttgaaattattatttaaaaggaaaatttatgctaatatgtgaaatcatgtgaagttttgtaacatcctaaatattaa 24603272  T
Q  416 atttatttttattatctaataattatcgttgggaaatagggtgttacaatgacattttctctcaaaccttgtttcttctctcaaattctacttacctttg 515  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  24603271 attta-ttttattatctaataattatcgttgggaaatagggtgttacaatgactttttctctcaaaccttgtttcttctctcaaattctacctgcctttg 24603173  T
Q  516 ctaattttggatggacctcctctattcctttataaaccctaaatccaatgctactctctgcttc 579  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||    
T  24603172 ctaattttggatggacctgctctattcctttataaaccctaaacccaatgctactatttgcttc 24603109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 24707950 - 24707788
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || |||||   ||||||  ||||||||||||| |||| | ||| |||||  |||| || |||| ||| |    
T  24707950 tgtaccttgagtatagatactcaggttgacaaggagtagatgtgggacaatttagaaggtggatatgaggggataccctctatttagttatgttatttag 24707851  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttggagttgaca 226  Q
    |||||||||| | ||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  24707850 tagttgaataagtatgtagtcgctacgagctttgatattgtaacactagggttggggttgaca 24707788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 24753713 - 24753551
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || |||||   ||||||  ||||||||||||| |||| | ||| |||||  |||| || |||| ||| |    
T  24753713 tgtaccttgagtatagatactcaggttgacaaggagtagatgtgggacaatttagaaggtggatatgaggggataccctctatttagttatgttatttag 24753614  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttggagttgaca 226  Q
    |||||||||| | ||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  24753613 tagttgaataagtatgtagtcgctacgagctttgatattgtaacactagggttggggttgaca 24753551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 24832775 - 24832929
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||| ||||||||| | ||||||||| ||||  |||| ||||||||||||| || | ||| |||||| |||| ||||||| ||| |    
T  24832775 tgtaccttgagtacagatgctcaggttgacaagaagtagctatggagcgttgtagaaggtggagaggaggggataccctccatttagttctgttatttag 24832874  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    | |||| ||| | |||||||  |||||||||||||||||||||||||||||||||    
T  24832875 ttgttggataagcatgtagtcactacgagctctgatattgtaacactagggttgg 24832929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 24740944 - 24740782
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || |||||   ||||||  ||||||||||||| |||| | ||| |||||  |||| || |||| ||| |    
T  24740944 tgtaccttgagtatagatactcaggttgacaaggagtagatgtgggacaatttagaaggtggatatgaggggataccctctatttagttatgttatttag 24740845  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttggagttgaca 226  Q
    |||||||||| | ||||||| |||||||||| |||||||||||||||||| |||| |||||||    
T  24740844 tagttgaataagtatgtagtcgctacgagctttgatattgtaacactaggattggggttgaca 24740782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 24671174 - 24671013
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || |||||   ||||||  ||||||||||||| |||| | ||| |||||  |||| || |||| ||| |    
T  24671174 tgtaccttgagtatagatactcaggttgacaaggagtagatgtgggacaatttagaaggtggatatgaggggataccctctatttagttatgttatttag 24671075  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttggagttgaca 226  Q
    |||||||||| | ||||||| |||||||||| |||||||||||||||| |||||| |||||||    
T  24671074 tagttgaataagtatgtagtcgctacgagctttgatattgtaacacta-ggttggggttgaca 24671013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 17445293 - 17445185
Alignment:
Q  109 gacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttgaatatgaatgtagttgctacgagctctgatattgtaaca 208  Q
    ||||||||||||||||||||||| | |||| |||  ||||| || |||| |||| ||||| |||| | ||||||| | ||||||||||||||||||||||    
T  17445293 gacgttttagaaggtggagatgaggggatgtcctatgtttagttttgttatttgctagttaaataagcatgtagtcgttacgagctctgatattgtaaca 17445194  T
Q  209 ctagggttg 217  Q
    |||||||||    
T  17445193 ctagggttg 17445185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 24671245 - 24671201
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24671245 ttttccctattattatgttatggcaggatttctcaccccttattt 24671201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 24708021 - 24707977
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24708021 ttttccctattattatgttatggcaggatttctcaccccttattt 24707977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 24741015 - 24740971
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24741015 ttttccctattattatgttatggcaggatttctcaccccttattt 24740971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 24753784 - 24753740
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24753784 ttttccctattattatgttatggcaggatttctcaccccttattt 24753740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 24832704 - 24832745
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcacccctta 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24832704 ttttccctattattatgttatggcaggatttctcacccctta 24832745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 24833114 - 24833183
Alignment:
Q  393 ttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttac 462  Q
    |||| ||||||| | | |||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  24833114 ttttataacatccttactattaaatatattcttattatttaataattatcgttgggaaatagggtgttac 24833183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 6056615 - 6056483
Alignment:
Q  202 tgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcgaacgacaagagaa 301  Q
    |||||||||||||| |  |||||  |||||| ||||||| ||| ||| ||||||||||||| |||||||| || ||||||||||| |||  |||||| ||    
T  6056615 tgtaacactagggtggaggttgaagttgaatctatttattgttgagtgtaaatcttgagaattattgttatttctatttcgatgttgaataacaagaaaa 6056516  T
Q  302 atttttattaatgagatcagatgattgttttcc 334  Q
    |   |||||||||| |||||   ||||||||||    
T  6056515 aaaattattaatgaaatcagggaattgttttcc 6056483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 464
Target Start/End: Complemental strand, 6056474 - 6056372
Alignment:
Q  362 aatttatgctaatatgtgaaatcatgtgaagttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgtta 461  Q
    |||||||| ||| |||||| ||||||||||| ||||||| ||  | | |||||||| | || ||||||| ||||||||||||| |  |||||| ||||||    
T  6056474 aatttatggtaacatgtgatatcatgtgaagctttgtaatattcttattattaaatattttcttattatttaataattatcgtcgaaaaatagtgtgtta 6056375  T
Q  462 caa 464  Q
    |||    
T  6056374 caa 6056372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 14136605 - 14136695
Alignment:
Q  135 gatgccctccgtttaattctgttgtttggtagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttggagttgac 225  Q
    |||||||||||||||   ||||| |||||| ||||||||   || |||| |||||||||| || |||||| ||| ||||||||| ||||||    
T  14136605 gatgccctccgtttagccctgttatttggttgttgaataatcatatagtcgctacgagctatggtattgttacattagggttggggttgac 14136695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 17445003 - 17444931
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    |||||||||||||||| | | ||||||  ||||||||||| ||||| ||||||| ||||| || | |||||||    
T  17445003 agttttgtaacatctttactgttaaataaatttttattatttaatatttatcgtcgggaagtatgatgttaca 17444931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 113 - 461
Target Start/End: Original strand, 20874458 - 20874806
Alignment:
Q  113 ttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttgaatatgaatgtagttgctacgagctctgatattgtaacactag 212  Q
    ||||||||||||| || || | ||||||||||||||| ||||||| |||||| | |||||| |||| |||| |||||||||||||||||||||||||||     
T  20874458 ttttagaaggtggggacgaggggatgccctccgtttagttctgttatttggttgatgaataagaatttagtcgctacgagctctgatattgtaacactaa 20874557  T
Q  213 ggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcgaacgacaagagaaatttttattaa 312  Q
    |||||  | |||| ||||||||||||||| || ||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  20874558 ggttgaggctgacgttgaatttatttatctttgagtttaaatattgagagctattgttatttctatttcgatgtcgaacgacaagagaaagttttattaa 20874657  T
Q  313 tgagatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgtgaagttttgtaacatcttaaatat 412  Q
    |||||||||| ||||||||||  | ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  20874658 tgagatcagaggattgttttctgctgttgaaattattatttacaaggaaaatttatgctaatatgtgatatcatgtgaagttttgtaacatcctaaatat 20874757  T
Q  413 taaatttatttttattatctaataattatcgttgggaaatagggtgtta 461  Q
    |||||||||  || || |||||||||||||||||||||||| |||||||    
T  20874758 taaatttatccttgttgtctaataattatcgttgggaaataaggtgtta 20874806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 190 - 464
Target Start/End: Original strand, 18558015 - 18558288
Alignment:
Q  190 gagctctgatattgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcga 289  Q
    |||||||||||| ||||||| |||||||  |||||   ||||| |||||||| || ||||||||||||||||||||| |||| || |||||||||||  |    
T  18558015 gagctctgatat-gtaacaccagggttgacgttgaggatgaatatatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttaa 18558113  T
Q  290 acgacaagagaaatttttattaatgagatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgtg 389  Q
    | |||||||||||||||||||||||| ||||||  |||||||||  |  |||||||| ||||||||||||||||||||  |||  |||||| ||||||||    
T  18558114 atgacaagagaaatttttattaatgatatcagagaattgttttctgctattgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtg 18558213  T
Q  390 aagttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttacaa 464  Q
    ||||||||||||||| ||| ||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||    
T  18558214 aagttttgtaacatcctaattattaaatttattctaattatttaataattatcgtcgggaaatagggtgttacaa 18558288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 188 - 463
Target Start/End: Complemental strand, 8807565 - 8807289
Alignment:
Q  188 acgagctctgatattgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtc 287  Q
    |||||||||||||| | |||||||||||||| |||||  ||||||||||||||| |||||||||||||||||| |||| | ||| || ||| || |||      
T  8807565 acgagctctgatat-gcaacactagggttggggttgatgttgaatttatttatctttaagtttaaatcttgag-actactattatttctatctcaatgct 8807468  T
Q  288 gaacgacaagagaaatttttattaatgagatcagatgattgt-tttccacagttgaaattgttattt--aaaaggaaaatttatgctaatatgtgaaatc 384  Q
    ||| ||||||||||| |||||||||||||||||||  |||||  ||||   |||| |||| ||||||  |||| ||||| ||||| |  ||||||| |||    
T  8807467 gaatgacaagagaaaattttattaatgagatcagagaattgtcattccgttgttggaattattattttaaaaaagaaaacttatgttgttatgtgatatc 8807368  T
Q  385 atgtgaagttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    | ||||| ||||||||  || ||| |||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||    
T  8807367 acgtgaaattttgtaatttcctaattattaaatctattcttattatttaataattatcgtcgggaaatagagtgttaca 8807289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 11555332 - 11555180
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||||||||||| |||||||||||||| | ||| ||||| ||| || ||||||||| |||||||||| | ||||||||||||||| ||||||| || |     
T  11555332 tgtactttgagtacagatactcaggttgacaaga-gtagctatgagatgttttagaaagtggagatgacgggatgccctccgtttagttctgttattag- 11555235  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    |||||||||| | ||||||| | ||||||||||||||||||||||||||||||||    
T  11555234 tagttgaataagcatgtagtcgatacgagctctgatattgtaacactagggttgg 11555180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 63 - 218
Target Start/End: Complemental strand, 12228347 - 12228193
Alignment:
Q  63 atgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttg 162  Q
    |||||| ||||||| ||||   ||||||| | || |||||| ||| ||||||||||||||||||||||| | ||||||||||||||| |||||||  ||     
T  12228347 atgtaccttgagtacagatgtccaggttgacaagcagtagctatgagacgttttagaaggtggagatgaggggatgccctccgtttagttctgtt-atta 12228249  T
Q  163 gtagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    ||||||||||| | |||||||  |||||||||||||||||||||||||| ||||||    
T  12228248 gtagttgaataagcatgtagtcactacgagctctgatattgtaacactaaggttgg 12228193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 16285832 - 16285985
Alignment:
Q  63 atgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttg 162  Q
    |||||| ||||||  |||||||||||||| | || |||| | |||||| |||||||||||||||||||| ||||||||||| | ||| |||||||  ||     
T  16285832 atgtaccttgagtgcagatactcaggttgacaaggagtaactatgggatgttttagaaggtggagatgaggagatgccctctg-ttagttctgtt-atta 16285929  T
Q  163 gtagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    ||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  16285930 gtaattgaataagcatgtagtcgctacgagctctgatattgtaacactagggttgg 16285985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 17335027 - 17334873
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    |||||||| |||| |||| ||||||||  |||| |||||  ||||||| ||||||||| ||||||||| | ||||||||||  ||| ||  |||| ||||    
T  17335027 tgtactttaagtacagatgctcaggttaacgaggagtagttatgggacattttagaagttggagatgaggggatgccctccagttagtttggttgcttgg 17334928  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    |||||||||| | ||||||| |||| ||||||||||||| |||||||||||||||    
T  17334927 tagttgaataagcatgtagtcgctatgagctctgatattataacactagggttgg 17334873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 11555403 - 11555359
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  11555403 ttttccctattattatgttatgacaggatttctcaccccttattt 11555359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 9563788 - 9563745
Alignment:
Q  18 tttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  9563788 tttccatattattatgttatggcaggatttctcaccccttattt 9563745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 16286170 - 16286240
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgtta 461  Q
    ||||||| |||||| | | |||||||| |||| ||||||| |||||||| |||||||||||||||||||||    
T  16286170 agttttggaacatccttactattaaatatattcttattatttaataattgtcgttgggaaatagggtgtta 16286240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 12228418 - 12228373
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  12228418 cttttccctattattatgttatgtcaggatttatcaccccttattt 12228373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 12228009 - 12227939
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgtta 461  Q
    |||||| ||||||| | | |||||||| |||| ||||||| ||||||||||||| || |||||||||||||    
T  12228009 agttttttaacatccttactattaaatatattcttattatttaataattatcgtcggaaaatagggtgtta 12227939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 17335099 - 17335054
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||    
T  17335099 ctttttcctattattatgttatggaaggatttcccaccccttattt 17335054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 16285762 - 16285802
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcacccctt 57  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  16285762 ttttccctattcttatgttatggtaggatttctcacccctt 16285802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 8e-81; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 191 - 463
Target Start/End: Original strand, 27871633 - 27871904
Alignment:
Q  191 agctctgatattgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcgaa 290  Q
    ||||||||||| ||||||| |||||||| ||||||  |||||||||||||| ||||||||||||||||||||| || |||| || ||||||||||| |||    
T  27871633 agctctgatat-gtaacaccagggttggggttgacgatgaatttatttatctttaagtttaaatcttgagaacaatagttatttctatttcgatgttgaa 27871731  T
Q  291 cgacaagagaaatttttattaatgagatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgtga 390  Q
     || |||||||||||||||||||||||| |||  |||||||||    ||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||    
T  27871732 tgataagagaaatttttattaatgagattagagaattgttttctgttgttgaaattattatttaaaagaaaaatttatgctattatgtgatatcatgtga 27871831  T
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    |||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  27871832 agttttgtaacatcctaattattaaatttattcttattatttaataattatcgtcgggaaatagggtgttaca 27871904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 14482362 - 14482515
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||| ||||||||| | ||||||||| ||||||||||| ||||||||||   || | ||||||||||||||| ||||||| ||| |    
T  14482362 tgtaccttgagtacagatgctcaggttgacaagaagtagcaatgggacgtttaagaaggtggatgggaggggatgccctccgtttagttctgttatttag 14482461  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttg 217  Q
    | |||||||| | |||||||  ||||||||||||||||||||||||||||||||    
T  14482462 ttgttgaataagcatgtagtcactacgagctctgatattgtaacactagggttg 14482515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 13927784 - 13927936
Alignment:
Q  66 tactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggta 165  Q
    ||||||||||| |||||| |||||||  ||| ||||||  ||||||||||||| |||||| | |||   ||||| ||||||||| |||| || || ||||    
T  13927784 tactttgagtacagatacccaggttgatgaggagtagctgtgggacgttttagtaggtggtggtgagtggatgctctccgtttagttctattattcggta 13927883  T
Q  166 gttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  13927884 gttgaataagaatgtagtcgctacgagctctgacattgtaacactagggttgg 13927936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 17782313 - 17782184
Alignment:
Q  63 atgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttg 162  Q
    |||||| ||||||| |||||||||||||| | || |||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||||||| |||     
T  17782313 atgtaccttgagtacagatactcaggttgacaaggagtagctatgggacgttttagaaggtggagatgaggggatgccctcggtttagttctgttattta 17782214  T
Q  163 gtagttgaatatgaatgtagttgctacgag 192  Q
    ||||||||||| | ||||||| || |||||    
T  17782213 gtagttgaataagcatgtagtcgcgacgag 17782184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 19090940 - 19090811
Alignment:
Q  63 atgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttg 162  Q
    |||||| ||||||| |||||||||||||| | || |||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||||||| |||     
T  19090940 atgtaccttgagtacagatactcaggttgacaaggagtagctatgggacgttttagaaggtggagatgaggggatgccctcggtttagttctgttattta 19090841  T
Q  163 gtagttgaatatgaatgtagttgctacgag 192  Q
    ||||||||||| | ||||||| || |||||    
T  19090840 gtagttgaataagcatgtagtcgcgacgag 19090811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 4713610 - 4713760
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || ||||||  ||||| |||||||| | ||||||||||| ||||||||||||||  ||  ||| ||| |    
T  4713610 tgtaccttgagtacagatactcaggttgacaaggagtagctgtgggatgttttagaggatggagatgatgggatgccctccgtttggtttggttatttag 4713709  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    |||||||||| |  ||||||  ||||||||||||||||||||||||||||||    
T  4713710 tagttgaataag-ttgtagtcactacgagctctgatattgtaacactagggt 4713760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 14055838 - 14055987
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||  ||| | || ||||||  |||||||||||||| | ||||||||||| ||||||||| || || ||||||| ||| |    
T  14055838 tgtaccttgagtatagatactcatcttgacaagtagtagctgtgggacgttttagaggatggagatgatgggatgccctctgtctagttctgttatttag 14055937  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactaggg 214  Q
    |||||||||| |  |||||| | |||||| |||||||||||||||||||||    
T  14055938 tagttgaataag-ttgtagtcggtacgaggtctgatattgtaacactaggg 14055987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 13929520 - 13929671
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||||||||||| |||||| ||||||| || || |||||  ||||||||||||  |||||| | |||   ||||| ||||||||| |||| || || ||    
T  13929520 tgtactttgagtacagatacccaggttgacggga-gtagctgtgggacgttttaacaggtggtggtgagaggatgctctccgtttagttctattattcgg 13929618  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttg 217  Q
    |||||||||| | ||||||  |||||||||||||||||||||||||||||||||    
T  13929619 tagttgaataagcatgtagc-gctacgagctctgatattgtaacactagggttg 13929671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 14063166 - 14063210
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14063166 ttttccctattattatgttatggcaggatttctcaccccttattt 14063210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 14482702 - 14482771
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||| | | |||||||| |||| ||||||| |||||||||||||||| |||||||||||||||    
T  14482702 tttgtaacatccttactattaaatatattcttattatttaataattatcgttggaaaatagggtgttaca 14482771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 4713538 - 4713583
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||    
T  4713538 cttttccctattattttgttatggcatgatttctcaccccttattt 4713583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 4713956 - 4714025
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||| |   |||||||| |||||||||||| |||||||||| |||||||| ||||||||||||    
T  4713956 tttgtaacatcctctctattaaatatatttttattatttaataattattgttgggaattagggtgttaca 4714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 14063509 - 14063578
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||| |   |||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  14063509 tttgtaacatcctctctattaaatatatttttattatttaataattatcgtcgggaattagggtgttaca 14063578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 16967408 - 16967477
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||| |   |||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  16967408 tttgtaacatcctctctattaaatatatttttattatttaataattatcgtcgggaattagggtgttaca 16967477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 13927711 - 13927755
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  13927711 ttttccctattattatgttatgacaagatttctcaccccttattt 13927755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 13929449 - 13929493
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  13929449 ttttccctattattatgttatgataggatttctcaccccttattt 13929493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 17782383 - 17782339
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||    
T  17782383 ttttccctattattaagttatggcaggagttctcaccccttattt 17782339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 19091010 - 19090966
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||    
T  19091010 ttttccctattattaagttatggcaggagttctcaccccttattt 19090966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 14055766 - 14055811
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||| |||||||||||||| || ||||||||||||||||||||    
T  14055766 cttttccatattattatgttattgctggatttctcaccccttattt 14055811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 16613883 - 16613843
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcacccct 56  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  16613883 cttttccctattattttattatggcaggatttctcacccct 16613843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 22045370 - 22045410
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcacccct 56  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  22045370 cttttccctattattttattatggcaggatttctcacccct 22045410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 215
Target Start/End: Original strand, 14063297 - 14063327
Alignment:
Q  185 gctacgagctctgatattgtaacactagggt 215  Q
    |||||||||||||||||||||||||||||||    
T  14063297 gctacgagctctgatattgtaacactagggt 14063327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 14056170 - 14056239
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||| |   |||||||| |||||||||||| ||||||||||||| |  || ||||||||||||    
T  14056170 tttgtaacatcctctctattaaatatatttttattatttaataattatcgtcgaaaattagggtgttaca 14056239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 14482291 - 14482332
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcacccctta 58  Q
    ||||||||||||||| |||||| ||| |||||||||||||||    
T  14482291 ttttccctattattacgttatgacagaatttctcacccctta 14482332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 202 - 463
Target Start/End: Original strand, 19548451 - 19548712
Alignment:
Q  202 tgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcgaacgacaagagaa 301  Q
    |||||||| |||||||| ||||||  |||| ||||||||| || ||||||||||||||||||||| |||| || |||||||||||  || ||||||||||    
T  19548451 tgtaacaccagggttggcgttgacgatgaacttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttaaatgacaagagaa 19548550  T
Q  302 atttttattaatgagatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgtgaagttttgtaac 401  Q
    |||||||||||||| ||||||  ||||||||   | ||||||||| ||||||||||||||||||||  |||  |||||| ||||||||||||||||||||    
T  19548551 atttttattaatgatatcagagaattgttttttgctgttgaaattattatttaaaaggaaaatttaaactacaatgtgatatcatgtgaagttttgtaac 19548650  T
Q  402 atcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||| ||| ||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||    
T  19548651 atcataattattaaatttattctaattatttaataattatcgtcgggaaatagggtgttaca 19548712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 189 - 464
Target Start/End: Complemental strand, 9190128 - 9189856
Alignment:
Q  189 cgagctctgatattgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcg 288  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |  || || |||||||||||||||||||| || |||| ||||||      
T  9190128 cgagctctgatat-gtaacactagggttgaagttgacgttgaatttatttatcttggagattgaatcttgagaactattgttatttctattacgatgtta 9190030  T
Q  289 aacgacaagagaaatttttattaatgagatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgt 388  Q
    || ||||||||||| ||||||||||||||| ||| |||||||||  |  ||| ||||| ||| ||||||||||| |||| |||| |||||||  ||||||    
T  9190029 aatgacaagagaaacttttattaatgagattagaggattgtttt--aacgtttaaattattacttaaaaggaaactttaggctattatgtgatgtcatgt 9189932  T
Q  389 gaagttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttacaa 464  Q
    |||| ||||||||||| | | ||||||||  ||| ||||||| ||||| |||||||| ||||||||||||||||||    
T  9189931 gaagatttgtaacatcattattattaaataaattcttattatttaatatttatcgttaggaaatagggtgttacaa 9189856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 14964930 - 14964769
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || |||||   |||||||||||||||||||||||||| | | ||||||||||| | ||||||| ||| |    
T  14964930 tgtaccttgagtacagatactcaggttgacaaggagtagttgtgggacgttttagaaggtggagatgagggggtgccctccgtt-agttctgttatttag 14964832  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttggagttgaca 226  Q
    |||||||||| |||||||||  |||| |||||||||||||||||||||||||||| |||||||    
T  14964831 tagttgaataagaatgtagtcactacaagctctgatattgtaacactagggttggggttgaca 14964769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 10907578 - 10907732
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| ||||| ||||||||   || |||||| ||| ||||||||||||||||||||||| | ||| ||||||||||| || |||| ||| |    
T  10907578 tgtaccttgagtacagatattcaggttgagaaggagtagctatgagacgttttagaaggtggagatgaggggattccctccgtttagttatgttatttag 10907677  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    |||||||||| | ||||||| |||||||||| |||||||||||||||||||||||    
T  10907678 tagttgaataagtatgtagtcgctacgagctttgatattgtaacactagggttgg 10907732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 10642153 - 10642266
Alignment:
Q  105 atgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttgaatatgaatgtagttgctacgagctctgatattgt 204  Q
    |||||||||||||||| ||||| || | | ||||||| ||||||| || |||| ||| || ||||||||   ||||||   |||||||||||||||||||    
T  10642153 atgggacgttttagaaagtggaaataaggggatgccccccgtttagttttgttatttagttgttgaataaacatgtagccactacgagctctgatattgt 10642252  T
Q  205 aacactagggttgg 218  Q
    ||||||||||||||    
T  10642253 aacactagggttgg 10642266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 10642450 - 10642522
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    |||||||||||||||| | |||||||| |||| ||||||| |||||||||||||||| ||||||| |||||||    
T  10642450 agttttgtaacatctttactattaaatatattcttattatttaataattatcgttggaaaataggatgttaca 10642522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 10907907 - 10907979
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    |||||||||||||| | | |||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||    
T  10907907 agttttgtaacatccttactattaaatatattcttattatttaataattatcattgggaaatagggtgttaca 10907979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 10907506 - 10907551
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  10907506 cttttccctattatcatgttatggcaggatttctcaccccttattt 10907551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 976964 - 976892
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    |||||||||||||| | | ||||| ||  ||| ||||||| ||||| ||||||| ||||||||||||||||||    
T  976964 agttttgtaacatccttattattatataaattcttattatttaatatttatcgtcgggaaatagggtgttaca 976892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 10642041 - 10642085
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||| || |||||||| ||||||||||    
T  10642041 ttttccctattattatgttatgacaagatttctcgccccttattt 10642085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 20147458 - 20147502
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||    
T  20147458 ttttccctattattatgttatagcagtatttatcaccccttattt 20147502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 22185370 - 22185326
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||    
T  22185370 ttttccctattattatgttatagcagtatttatcaccccttattt 22185326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 14964592 - 14964527
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaataggg 456  Q
    |||||||||||||| | | |||||||  |||| || |||| ||||||||||||| |||||||||||    
T  14964592 agttttgtaacatccttactattaaagatattcttgttatttaataattatcgtcgggaaataggg 14964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 190 - 465
Target Start/End: Original strand, 5804 - 6077
Alignment:
Q  190 gagctctgatattgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcga 289  Q
    |||||||||||| ||||||| |||||||| ||||||  |||||||||||||| || ||||||||||||||||||||| |||| || ||||||||||| ||    
T  5804 gagctctgatat-gtaacaccagggttggggttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttga 5902  T
Q  290 acgacaagagaaatttttattaatgagatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgtg 389  Q
    | || |||||||||||| |||||||| ||| ||  |||||||||  | ||||||||| ||||||||||||||||||||  |||  |||||| ||||||||    
T  5903 atgataagagaaatttt-attaatgatatctgagaattgttttctgctgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtg 6001  T
Q  390 aagttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttacaat 465  Q
    ||||||| ||||||| ||| ||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||    
T  6002 aagttttataacatcctaattattaaatttattcttattatttaataattatcgtcgggaaatagagtgttacaat 6077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 190 - 463
Target Start/End: Original strand, 18988507 - 18988779
Alignment:
Q  190 gagctctgatattgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcga 289  Q
    |||||||||||| ||||||| |||||||| ||||||  |||||||||||||| || ||||||||||||||||||||| |||| |||||||||||||| ||    
T  18988507 gagctctgatat-gtaacaccagggttggggttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttttatttcgatgttga 18988605  T
Q  290 acgacaagagaaatttttattaatgagatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaatatgtgaaatcatgtg 389  Q
    | |||||| |||||||||||||||||||| |||  ||||||||     ||||||||| |||||| |||| ||||||||||||| ||||||| ||||||||    
T  18988606 atgacaagtgaaatttttattaatgagattagaaaattgttttatgttgttgaaattattattt-aaagaaaaatttatgctattatgtgatatcatgtg 18988704  T
Q  390 aagttttgtaacatcttaaatattaa-atttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||| ||| ||| |||||| |||||||  |||||| |||||||||||||  |||||||||||||||||    
T  18988705 aagttttgtaaaatcataattattaatatttattcatattatttaataattatcgtctggaaatagggtgttaca 18988779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 275 - 438
Target Start/End: Complemental strand, 12132685 - 12132521
Alignment:
Q  275 ttatttcgatgtcgaacgacaagagaaatttttattaatgagatcagatgattgttttccacagttgaaattgttatttaaaaggaaaatttatgctaat 374  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  12132685 ttatttcgatgtcgaacgacaagagaattttttattaatgagatcagaggattgttttccgctgttgaaattattatttaaaaggaaaatttatgctaat 12132586  T
Q  375 atgtgaaat-catgtgaagttttgtaacatcttaaatattaaatttatttttattatctaataat 438  Q
    || ||| || |||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  12132585 atttgatatgcatgtgaagtttcgtaacctcctaaatattaaatttatttttattatctaataat 12132521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 187 - 463
Target Start/End: Complemental strand, 16858064 - 16857787
Alignment:
Q  187 tacgagctctgatattgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgt 286  Q
    ||||||||||||||| ||||||| | |||||| || ||  ||| ||||||||||| ||||||| |||||||||||||||| |||| || ||| |||||||    
T  16858064 tacgagctctgatat-gtaacaccatggttggggtcgatgttggatttatttatctttaagttcaaatcttgagaactatagttatttctatctcgatgt 16857966  T
Q  287 cgaacgacaagagaaatttttattaatgagatcagatgattgt-tttccacagttgaaattgtta-tttaaaaggaaaatttatgctaatatgtgaaatc 384  Q
     ||| ||||||||||| ||||| ||||||||||||| ||||||  || | | |||| |||| ||| ||||||| | ||||||||| |  ||||||| |||    
T  16857965 tgaatgacaagagaaaattttaataatgagatcagaggattgtcctttcgctgttggaattattattttaaaaaggaaatttatgttgttatgtgacatc 16857866  T
Q  385 atgtgaagttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||  ||| |||||||||||| ||| ||||||||||||| ||||||| | |||||||||||  |||||||||||||||||    
T  16857865 attcgaaattttgtaacatcctaattattaaatttattcttattattttataattatcgtcaggaaatagggtgttaca 16857787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 44587199 - 44587352
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||  | || |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||  || |    
T  44587199 tgtaccttgagtacagatactcaggttaacaaggagtagctatgggacgttttagaaggtggagatgaggagatgccctccgtttagttctgttaattag 44587298  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttg 217  Q
    ||||||||||   | ||||| |||||||||||||||||||||||||||||||||    
T  44587299 tagttgaataaacaagtagtcgctacgagctctgatattgtaacactagggttg 44587352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 24786037 - 24785883
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || |||||| ||||||||||||||||||||||||| | | |||| |||| ||||| || |||| |||      
T  24786037 tgtaccttgagtacagatactcaggttgacaaggagtagctatgggacgttttagaaggtggagatcaggggatgtcctctgtttagttatgttatttaa 24785938  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    ||| |||||| | ||||||||||||||||||| ||||||||||||||||||||||    
T  24785937 tagatgaataagcatgtagttgctacgagctccgatattgtaacactagggttgg 24785883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 23661618 - 23661759
Alignment:
Q  73 agtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttgaat 172  Q
    |||| |||||||||||||| | || |||||  ||||||||||||| ||||||||||||| ||||||||||| ||||| | | |||  || | ||||||||    
T  23661618 agtacagatactcaggttgacaaggagtagatatgggacgttttataaggtggagatgaggagatgccctctgtttagtccagtt-attagcagttgaat 23661716  T
Q  173 atgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    | | ||||||| |||||||||||||||||||||||||| ||||    
T  23661717 aagcatgtagtcgctacgagctctgatattgtaacacttgggt 23661759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 23661537 - 23661582
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23661537 cttttccctattattatgttatggcaggatttctcaccccttattt 23661582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 23661949 - 23662021
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    |||||||||||||| | | |||||||| |||| ||||||| |||||||||||||||| ||||| |||||||||    
T  23661949 agttttgtaacatccttactattaaatatattcttattatttaataattatcgttggaaaataaggtgttaca 23662021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 24725567 - 24725639
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||||||||   |||||||| |||||||||||| ||||||||||||| ||||| || |||||||||    
T  24725567 agttttgtaacatcttctctattaaatatatttttattatttaataattatcgtcgggaattatggtgttaca 24725639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 24785710 - 24785638
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    |||||||||||||| | |  ||||||| |||| ||||||| |||||||||| |||||||||||||||||||||    
T  24785710 agttttgtaacatccttaccattaaatatattcttattatttaataattattgttgggaaatagggtgttaca 24785638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 24786108 - 24786064
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  24786108 ttttcccaattattatgttatggcaggatttctcacctcttattt 24786064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 44587128 - 44587172
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||| |||||||||||||||| |||||||||||||    
T  44587128 ttttccctattattttgttatggcaggatttatcaccccttattt 44587172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 44587537 - 44587607
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgtta 461  Q
    ||||||| |||||| | | |||||| | |||| ||||||| ||||||||||| |||| |||||||||||||    
T  44587537 agttttgcaacatcatcactattaattatattcttattatttaataattatcattggaaaatagggtgtta 44587607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 20594582 - 20594529
Alignment:
Q  410 tattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||||| ||||||| | ||||||||||| || ||||||| |||||||    
T  20594582 tattaaatttattcttattattttataattatcgtcggaaaataggatgttaca 20594529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 27470847 - 27470884
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcacc 53  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  27470847 cttttccttatttttatgttatggcaggatttctcacc 27470884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 464
Target Start/End: Original strand, 32253198 - 32253271
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttacaa 464  Q
    |||||||||||||| |   ||||||||  ||| ||||||| ||||  |||||||||| ||||||||||||||||    
T  32253198 agttttgtaacatcctttttattaaataaattattattatttaatgtttatcgttggaaaatagggtgttacaa 32253271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 22615493 - 22615647
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || |||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||| |    
T  22615493 tgtaccttgagtacagatactcaggttgacaaggagtagctatgggacgttttagaaggtggagatgaggggatgccctccgtttagttctgttatttag 22615592  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    || ||||||| | |||||||  | |||||||||||||| |||||| |||||||||    
T  22615593 taattgaataagcatgtagtctccacgagctctgatatcgtaacattagggttgg 22615647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 9079652 - 9079502
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | || ||||||  |||||||||||||| | ||||||||||| |||||||||||  || ||||||| ||| |    
T  9079652 tgtaccttgagtatagatactcaggttgacaaggagtagctgtgggacgttttagaggatggagatgatgggatgccctccgcctagttctgttatttag 9079553  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    |||||||||| |  |||||| |||||||||||||||||||||||||||||||    
T  9079552 tagttgaataag-ttgtagtcgctacgagctctgatattgtaacactagggt 9079502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 37946613 - 37946761
Alignment:
Q  63 atgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttg 162  Q
    |||||||||||||| ||||||||||||||  ||| |||||| |   ||| |||| |||| ||||||||| | ||||||||||||||| |||||||  |||    
T  37946613 atgtactttgagtacagatactcaggttgatgaggagtagctacaagacatttttgaagatggagatgaggggatgccctccgtttagttctgttacttg 37946712  T
Q  163 gtagttgaatatgaatgtagttgctacgagctctgatattgtaacacta 211  Q
    || |||||||| | ||||||| |||| ||||||||||||||||||||||    
T  37946713 gtggttgaataagcatgtagtcgctatgagctctgatattgtaacacta 37946761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 48376099 - 48375956
Alignment:
Q  71 tgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttga 170  Q
    |||||| |||||||||||||| | || |||||   |||||||||||||| | ||||||||||| ||||||||||||||  || |||| ||| ||||||||    
T  48376099 tgagtacagatactcaggttgacaaggagtagatgtgggacgttttagaggatggagatgatgggatgccctccgtttggttttgttatttagtagttga 48376000  T
Q  171 atatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    ||| |  |||||| |||||||||||||||||||||||||||||||    
T  48375999 ataag-ttgtagtcgctacgagctctgatattgtaacactagggt 48375956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 16059849 - 16059706
Alignment:
Q  71 tgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttga 170  Q
    |||||| |||||||||||||| | || ||||||  |||||||||||||| | ||||||||||| |||||| |||||||  || |||| ||| ||||||||    
T  16059849 tgagtacagatactcaggttgacaaggagtagctgtgggacgttttagaggatggagatgatgggatgccttccgtttggttttgttatttagtagttga 16059750  T
Q  171 atatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    |||    |||||| ||||||||||||||||||||||| |||||||    
T  16059749 ata-atttgtagtcgctacgagctctgatattgtaaccctagggt 16059706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 13486551 - 13486654
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| |||||||||||||| | |  |||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||| |    
T  13486551 tgtaccttgagtacagatactcaggttgacaatgagtagctatgggacgttttagaaggtggagatgaggagatgccctccgtttagttttgttatttag 13486650  T
Q  164 tagt 167  Q
    ||||    
T  13486651 tagt 13486654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 163 - 464
Target Start/End: Original strand, 6899944 - 6900245
Alignment:
Q  163 gtagttgaatatgaatgtagttgctacgagctctgata-ttgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgaga 261  Q
    ||||||||||| | ||||||  |||| || |||||||  ||||||||| |||||||| ||| || |||||||||||| || || ||||| |||  || ||    
T  6899944 gtagttgaataagtatgtagacgctatgaactctgattcttgtaacaccagggttggggttaacgttgaatttatttgtctttgagtttgaattgtg-ga 6900042  T
Q  262 actattgttagttttatttc-gatgtcgaacgacaagagaaatttttattaatgagatcagatgattgttttccacagttgaaattgttattta-aaagg 359  Q
    |||||||||| |||  |||  ||||| ||| |||||||  ||||||| |||||||||| || |||| ||||||||| | ||||| | ||  ||| |||||    
T  6900043 actattgttattttcttttatgatgttgaatgacaagaataatttttgttaatgagattag-tgat-gttttccactgctgaaaatatttattataaagg 6900140  T
Q  360 aaaatttatgctaatatgtgaaatcatgtgaagttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgt 459  Q
    |||||||||  || |||||||||| |||   |||||| ||||||| ||  |||||||| |||| | ||||| |||||||||| |  || |||||||||||    
T  6900141 aaaatttatattattatgtgaaataatgacgagttttataacatcctatttattaaatatattctcattatttaataattattgccggaaaatagggtgt 6900240  T
Q  460 tacaa 464  Q
    |||||    
T  6900241 tacaa 6900245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 391 - 463
Target Start/End: Original strand, 22615830 - 22615902
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    |||||||||||||| | | |||||||| |||| ||||||| ||||||||||||||||||||||||||||||||    
T  22615830 agttttgtaacatccttactattaaatatattcttattatttaataattatcgttgggaaatagggtgttaca 22615902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 4532510 - 4532661
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||  |||||||| ||||| |||| ||||||  |||||||||||||||||   |||||| | ||||||||||||||| | || || | | |    
T  4532510 tgtaccttgagtgcagatactcgggttgacgaggagtagctgtgggacgttttagaaggcaaagatgaggggatgccctccgtttagtactcttatctag 4532609  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    ||||||||||   ||||||| ||||| |||| ||||| ||||||||||||||    
T  4532610 tagttgaataatcatgtagtcgctacaagctttgatactgtaacactagggt 4532661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 13486874 - 13486945
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttac 462  Q
    |||||||||||||| | |||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||    
T  13486874 agttttgtaacatccttaatattaaatatattcttattatttaataattatcgttgggaaataaggtgttac 13486945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 22615422 - 22615466
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22615422 ttttccctattattatgttatggcaggatttctcaccccttattt 22615466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 16059927 - 16059883
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  16059927 ttttccctattattttgttatggcaggatttctcaccccttattt 16059883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 9079320 - 9079251
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||| |   |||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  9079320 tttgtaacatcctctctattaaatatatttttattatttaataattatcgtcgggaattagggtgttaca 9079251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 48376178 - 48376133
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  48376178 cttttccctgttattttgttatggcaggatttctcaccccttattt 48376133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 20025373 - 20025333
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcacccctt 57  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  20025373 ttttccctattattatgttatggcaggatttcttacccctt 20025333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 48375771 - 48375700
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttacaat 465  Q
    ||||||||||| |   |||||||| |||||||||||| ||||||||||||| ||||| ||| ||||||||||    
T  48375771 tttgtaacatcctctctattaaatatatttttattatttaataattatcgtcgggaattagagtgttacaat 48375700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 9079724 - 9079679
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||| ||||||||||||||||||| |||||||||||| ||||||    
T  9079724 cttttctctattattatgttatggcatgatttctcaccctttattt 9079679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 13486656 - 13486689
Alignment:
Q  185 gctacgagctctgatattgtaacactagggttgg 218  Q
    ||||||||||||||||||||||||||||||||||    
T  13486656 gctacgagctctgatattgtaacactagggttgg 13486689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 464
Target Start/End: Original strand, 37946950 - 37947023
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttacaa 464  Q
    |||||||||||| ||  | |||||||| |||| ||||||| ||||| ||||||| |||||| ||||||||||||    
T  37946950 agttttgtaacaactgtattattaaatatattcttattatttaatatttatcgtcgggaaaaagggtgttacaa 37947023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 37946541 - 37946587
Alignment:
Q  15 acttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||| ||||||||||||||||| || ||||| |||||||||||||    
T  37946541 actttttcctattattatgttatgacatgatttatcaccccttattt 37946587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 190 - 333
Target Start/End: Original strand, 15208 - 15350
Alignment:
Q  190 gagctctgatattgtaacactagggttggagttgacattgaatttatttatcgttaagtttaaatcttgagaactattgttagttttatttcgatgtcga 289  Q
    |||||||||||| ||||||| |||||||| ||| ||  |||||||||||||| || |||||||||||||||||||||  ||| |||||||||||||| ||    
T  15208 gagctctgatat-gtaacaccagggttggggtttacgatgaatttatttatctttgagtttaaatcttgagaactataattatttttatttcgatgttga 15306  T
Q  290 acgacaagagaaatttttattaatgagatcagatgattgttttc 333  Q
    | ||||||||||||||||||||||||||| | || |||||||||    
T  15307 atgacaagagaaatttttattaatgagattacataattgttttc 15350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 24505471 - 24505318
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||| ||||||| ||||||||||||||   || |||||   || ||||||||||||||| ||||||| | ||||||||||||||| || |||| ||| |    
T  24505471 tgtaccttgagtacagatactcaggttgataaggagtagttgtgtgacgttttagaaggttgagatgaggggatgccctccgtttagttatgttatttag 24505372  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttg 217  Q
    |||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  24505371 tagttgaataagcatgtagtcgctacgagctctgatattgtaacactagggttg 24505318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 24505542 - 24505497
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||| ||||||||||||||||   |||||||||||||||||||||    
T  24505542 ctttttcctattattatgttattataggatttctcaccccttattt 24505497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 63 - 218
Target Start/End: Complemental strand, 11884 - 11731
Alignment:
Q  63 atgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttg 162  Q
    |||||| ||||||  |||||||||||||| | || |||| | |||||| |||||||||||||||||||| ||||||||||| | ||| |||||||  ||     
T  11884 atgtaccttgagtgcagatactcaggttgacaaggagtaactatgggatgttttagaaggtggagatgaggagatgccctctg-ttagttctgtt-atta 11787  T
Q  163 gtagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttgg 218  Q
    ||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  11786 gtaattgaataagcatgtagtcgctacgagctctgatattgtaacactagggttgg 11731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 11546 - 11476
Alignment:
Q  391 agttttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgtta 461  Q
    ||||||| |||||| | | |||||||| |||| ||||||| |||||||| |||||||||||||||||||||    
T  11546 agttttggaacatccttactattaaatatattcttattatttaataattgtcgttgggaaatagggtgtta 11476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 11954 - 11914
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcacccctt 57  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  11954 ttttccctattcttatgttatggtaggatttctcacccctt 11914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 51659509 - 51659617
Alignment:
Q  106 tgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttgaatatgaatgtagttgctacgagctctgatattgta 205  Q
    |||||||||||||| | ||||||||||| ||||||||||||||| ||||||| ||| ||||||||||| |  |||||| |||||||||||||||||||||    
T  51659509 tgggacgttttagaggatggagatgatgggatgccctccgtttagttctgttatttagtagttgaataag-ttgtagtcgctacgagctctgatattgta 51659607  T
Q  206 acactagggt 215  Q
    ||||||||||    
T  51659608 acactagggt 51659617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 1567492 - 1567652
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||||||||||| | ||||||||||||  ||| |||||   ||||||||||||||||||||| |||| | |||| | ||  |||| | ||| | |||||    
T  1567492 tgtactttgagtacaaatactcaggttgatgagcagtagttgtgggacgttttagaaggtggaaatgaggggatgtcatctctttagt-ctgatatttgg 1567590  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacactagggttggagttgac 225  Q
    |||||| ||| | ||||||| ||||||||||| |||||||||||||||| ||||| ||||||    
T  1567591 tagttggataagcatgtagtcgctacgagctccgatattgtaacactagcgttggggttgac 1567652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 51659396 - 51659440
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51659396 ttttccctattattatgttatggcaggatttctcaccccttattt 51659440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 1567422 - 1567465
Alignment:
Q  18 tttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  1567422 tttccctattattatgttatagcaggatttctcaccccttattt 1567465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 13676 - 13533
Alignment:
Q  71 tgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttga 170  Q
    |||||| |||||||||||||| | || |||||   |||||||||||||| | ||||||||||| |||||| |||||||  || | |||||| ||||||||    
T  13676 tgagtacagatactcaggttgacaaggagtagttgtgggacgttttagaggatggagatgatgggatgccttccgtttggtttttttgtttagtagttga 13577  T
Q  171 atatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    ||| |  |||||| |||||||||||||||||||||||||||||||    
T  13576 ataag-ttgtagtcgctacgagctctgatattgtaacactagggt 13533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 13755 - 13710
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||    
T  13755 cttttccctattattttgttatggcaggatttcttaccctttattt 13710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 130087 - 129944
Alignment:
Q  71 tgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttga 170  Q
    |||||| |||||||||||||| | || ||||||  |||||||||||||| | || |||||||  ||||||||||||||  || |||| ||| ||||||||    
T  130087 tgagtacagatactcaggttgacaaggagtagctgtgggacgttttagaggatgaagatgattggatgccctccgtttggttttgttatttagtagttga 129988  T
Q  171 atatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    ||| |  || ||| ||||||||||||||||||||||| |||||||    
T  129987 ataag-ttgcagtcgctacgagctctgatattgtaacgctagggt 129944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 130166 - 130121
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  130166 ctttttcctattattttgttatggcaggatttctcaccccttattt 130121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 129758 - 129689
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgttaca 463  Q
    ||||||||||| |   |||||||| ||||| |||||| |||||||||| || ||||| ||||||||||||    
T  129758 tttgtaacatcctctctattaaatatatttgtattatttaataattattgtcgggaattagggtgttaca 129689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 29077 - 29219
Alignment:
Q  71 tgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttggtagttga 170  Q
    |||||| |||||||||||||| | || ||||||  |||||||||||||| | ||||||||||| ||||||||||||||  || |||| ||  |||||| |    
T  29077 tgagtacagatactcaggttgacaaggagtagctgtgggacgttttagaggatggagatgatgggatgccctccgtttggttttgttattaagtagttaa 29176  T
Q  171 atatgaatgtagttgctacgagctctgatattgtaacactagggt 215  Q
    ||| |  |||||| | ||||||||| |||||||||||||||||||    
T  29177 ataag-ttgtagtcgatacgagctc-gatattgtaacactagggt 29219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 28998 - 29043
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcaccccttattt 61  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||    
T  28998 cttttccctattattttgttatggtaggatttctcaccccttattt 29043  T

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Target: scaffold0063; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 461
Target Start/End: Original strand, 29403 - 29470
Alignment:
Q  394 tttgtaacatcttaaatattaaatttatttttattatctaataattatcgttgggaaatagggtgtta 461  Q
    ||||||||||| |   |||||||| |||||||||||| |||||||||| || ||||| ||||||||||    
T  29403 tttgtaacatcctctctattaaatatatttttattatttaataattattgtcgggaattagggtgtta 29470  T

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Target: scaffold0601 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 5574 - 5615
Alignment:
Q  17 ttttccctattattatgttatggcaggatttctcacccctta 58  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  5574 ttttccctattattatgttatagcaggatttctcacccctta 5615  T

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Target: scaffold0725 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 5392 - 5247
Alignment:
Q  64 tgtactttgagtagagatactcaggttgccgagaagtagcgatgggacgttttagaaggtggagatgatgagatgccctccgtttaattctgttgtttgg 163  Q
    ||||||||||||| ||||||| |||||| |||| ||||||  | |||||||||| ||||| ||||||| | |||  |||  | ||| ||| | | ||| |    
T  5392 tgtactttgagtacagatacttaggttgacgaggagtagctttaggacgttttacaaggttgagatgaggggattgcctttgcttagttccgatatttag 5293  T
Q  164 tagttgaatatgaatgtagttgctacgagctctgatattgtaacac 209  Q
    || ||||||| |||||||||  |||||| || |||||||| |||||    
T  5292 tacttgaataagaatgtagtctctacgatctttgatattgaaacac 5247  T

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Target: scaffold0239 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 21880 - 21920
Alignment:
Q  16 cttttccctattattatgttatggcaggatttctcacccct 56  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  21880 cttttccctattatttttttatggcaggatttctcacccct 21920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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