View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11111_high_4 (Length: 344)
Name: NF11111_high_4
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 74 - 333
Target Start/End: Complemental strand, 36867899 - 36867641
Alignment:
| Q |
74 |
tttatatccttttaaccgtgaatctctatcaacaaatatttggagcacgaaaaatagattgtcctatttcaatcagattttttcataggcaaacattagt |
173 |
Q |
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| T |
36867899 |
tttatatccttttaaccgtgaatctcta-caaaaaatatttcgagcacgaaaaatagattatcctatttcaatcagattttttcatacgcaaacattaga |
36867801 |
T |
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| Q |
174 |
gatcaaaccctttaacannnnnnnnaatgacaaatattattaattagttgttgtgttagttttttcttcctaatacatatttgaatttagaacctccaac |
273 |
Q |
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| T |
36867800 |
gatcaaactctttagcactttttttaatgaccaatattaataattagttgttgtgttagttttttcttcccgatacatatttgaatttaggacctccaac |
36867701 |
T |
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| Q |
274 |
tcttttctcctcaaattaattagactatccaaccctctaccacttacttaaggaattcat |
333 |
Q |
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| T |
36867700 |
tcttttctcctcaaattaattagactatccaaccctctaccatttacttaaggaattcat |
36867641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 36868548 - 36868511
Alignment:
| Q |
19 |
gaatctctatcgagaaatgtaggaagtttatattcctt |
56 |
Q |
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| T |
36868548 |
gaatctctatcgagaaatgtaggaagtttatattcctt |
36868511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 103850 - 103889
Alignment:
| Q |
199 |
aatgacaaatattattaattagttgttgtgttagtttttt |
238 |
Q |
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| T |
103850 |
aatgacaaatcttagtaattagttgttgtgttagtttttt |
103889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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