View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11111_high_6 (Length: 340)
Name: NF11111_high_6
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_high_6 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0288 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 192 - 328
Target Start/End: Original strand, 9640 - 9779
Alignment:
| Q |
192 |
agaataaggctatccaacttaaggta--gcatatcctaccctaattccaccatagtcacaaaggaatcaaccttagtctacgaagacacactc-aaaaaa |
288 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | |||||||| |||| |||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
9640 |
agaataaggctatccaacttaaggtaaagcatatcctagcttaattccatcatactcacaaagtaaccaaccttagtctacgaagacacactctaaaaaa |
9739 |
T |
|
| Q |
289 |
ttaagctataatactaaagataacatttataatgtacctt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9740 |
ttaagctataatactaaagataacatttatggtgtacctt |
9779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University