View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11111_low_1 (Length: 698)
Name: NF11111_low_1
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 663; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 1 - 687
Target Start/End: Original strand, 39959691 - 39960377
Alignment:
| Q |
1 |
taatgcactgaaagctcatgctatggaagtaagctccgggtgtgatgtgaatgagagtttgttgaactttgcaaggagaaagcaacgtggtctttgtata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39959691 |
taatgcactgaaagctcatgctatggaagtaagctccgggtgtgatgtgaatgagagtttgttgaactttgcaaggagaaagcagcgtggtctttgtata |
39959790 |
T |
|
| Q |
101 |
cttaatggcaccggttgtgtcacgaatgtaacgctgcgccaaccagcttcttctggtgccattgtgacccttcatggtcgattcgagattctctcattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39959791 |
cttaatggcaccggttgtgtcacgaatgtaacgctgcgccaaccagcttcttctggtgccattgtgacccttcatggtcgattcgagattctctcattgt |
39959890 |
T |
|
| Q |
201 |
tggggtcaattcttccgccacctgcaccaccaggaatcactggtcttataatttatttagcgggtgctcaaggacaagttgttggaggtgctgtagttgg |
300 |
Q |
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| T |
39959891 |
tgggctcaattcttccgccacctgcaccaccaggaatcactggtcttacaatttatttagcgggtgctcaaggacaagttgttggaggtgctgtagttgg |
39959990 |
T |
|
| Q |
301 |
tgctttgattgcttcaggacctgttgtgatcatggctgcatcattcatgcatgctactttcgatcgtctgccactggaagacgatgaacttgctgctgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39959991 |
tgctttgattgcttcaggacctgttgtgatcatggctgcatcattcatgcatgctactttcgatcgtctgccactggaagacgatgaacttgctgctgca |
39960090 |
T |
|
| Q |
401 |
atgcagaatcagcattaccaaaatggacgcgcggcacaacatcatctcgatatctctgacttatatgcaatgccgcaaaacctcctcatgaatggtgcaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39960091 |
atgcagaatcagcattaccaaaatggacgcgcggcacaacatcatctcgatatctctgacttatatgcaatgccgcaaaacctcctcatgaatggtgcaa |
39960190 |
T |
|
| Q |
501 |
tgccgcctgagatatactcttgggcaccggggcgaaactagtcaaaaacctgaaacttagtttactattagtagttgtatcacatccacaaaatacacta |
600 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39960191 |
tgccacctgagatatactcttgggcaccgggtcgaaacttgtcaaaaacctgaaacttagtttactattagtagttgtatcacatccacaaaatacacta |
39960290 |
T |
|
| Q |
601 |
taggatagctataatgttaccagattcttgtacaagcaagggtataagaaggttgacattgctaaacaagatcatatgcctatgctt |
687 |
Q |
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| T |
39960291 |
taggatagctataatgttaccagattcttgtacaagcaagggtataagaaggttgacattgctaaacaagatcatatgcctatgctt |
39960377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 3332108 - 3332035
Alignment:
| Q |
254 |
tatttagcgggtgctcaaggacaagttgttggaggtgctgtagttggtgctttgattgcttcaggacctgttgt |
327 |
Q |
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||||||||||| | ||||| || |||||||| || ||| |||||||||||||||||||| ||||||||||| |
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| T |
3332108 |
tatttagcgggcggacaagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgttgt |
3332035 |
T |
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