View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11111_low_10 (Length: 265)

Name: NF11111_low_10
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11111_low_10
NF11111_low_10
[»] chr6 (4 HSPs)
chr6 (18-221)||(7364966-7365168)
chr6 (18-90)||(29063585-29063657)
chr6 (18-90)||(29118439-29118511)
chr6 (18-136)||(19694556-19694674)
[»] chr8 (2 HSPs)
chr8 (18-221)||(11354783-11354984)
chr8 (18-173)||(24945005-24945158)
[»] chr4 (5 HSPs)
chr4 (18-221)||(26861272-26861473)
chr4 (18-136)||(22405051-22405169)
chr4 (18-89)||(3121243-3121314)
chr4 (18-85)||(46944061-46944128)
chr4 (18-136)||(21263579-21263697)
[»] chr1 (5 HSPs)
chr1 (18-221)||(42117063-42117264)
chr1 (18-221)||(49741330-49741531)
chr1 (18-136)||(15581581-15581699)
chr1 (21-136)||(42365900-42366015)
chr1 (18-87)||(23473774-23473843)
[»] chr3 (8 HSPs)
chr3 (18-221)||(30813210-30813413)
chr3 (18-142)||(14567859-14567983)
chr3 (18-136)||(42029281-42029399)
chr3 (18-85)||(25909357-25909424)
chr3 (18-136)||(11456642-11456760)
chr3 (18-81)||(11414573-11414636)
chr3 (18-136)||(27011196-27011314)
chr3 (40-136)||(25045409-25045505)
[»] chr5 (5 HSPs)
chr5 (18-221)||(32233018-32233219)
chr5 (40-136)||(30084937-30085033)
chr5 (18-85)||(11617249-11617316)
chr5 (18-85)||(15021741-15021808)
chr5 (18-136)||(4943542-4943660)
[»] chr2 (2 HSPs)
chr2 (18-136)||(28219033-28219151)
chr2 (96-136)||(1499218-1499258)
[»] chr7 (3 HSPs)
chr7 (18-136)||(23417212-23417330)
chr7 (50-136)||(35759780-35759866)
chr7 (18-134)||(19625432-19625548)
[»] scaffold0022 (2 HSPs)
scaffold0022 (18-85)||(44166-44233)
scaffold0022 (18-85)||(77887-77954)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 7365168 - 7364966
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||    
T  7365168 ttgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaataccacccaaaccttcaatttttcattcccctcaaat 7365069  T
Q  118 tgaggtgtatccaatggaagagagtaccataacaaaaaatattacatttttaccccnnnnnnnnattttatctataacatgttccttcaactactgttct 217  Q
    |  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||||    
T  7365068 tagggtgtattcaatggaatagagtaccataacaaaaaatattacatttttacccc-tgtttttattttatctgtaacatgttcctccaactactgttct 7364970  T
Q  218 tacg 221  Q
    ||||    
T  7364969 tacg 7364966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 29063585 - 29063657
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaa 90  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  29063585 ttgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaataccagccaa 29063657  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 29118439 - 29118511
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaa 90  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  29118439 ttgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaataccagccaa 29118511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 19694674 - 19694556
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| ||||| | ||||||| || |||||| | ||||||   ||||||||||||| ||||| || ||||| |||||| |||||||| || |    
T  19694674 ttgtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattccccccaatt 19694575  T
Q  118 tgaggtgtatccaatggaa 136  Q
    || |||| || ||||||||    
T  19694574 tggggtgcatgcaatggaa 19694556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 11354783 - 11354984
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| | ||||    
T  11354783 ttgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactgattccatccaataccacccaaaccttcaattttttattccctccaaat 11354882  T
Q  118 tgaggtgtatccaatggaagagagtaccataacaaaaaatattacatttttaccccnnnnnnnnattttatctataacatgttccttcaactactgttct 217  Q
    || |||||||||||||||| |||||||| |||| ||||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||||    
T  11354883 tggggtgtatccaatggaatagagtaccgtaac-aaaaatattacatttttacccc-tgtttttattttatctgtaacatgttcctccaactactgttct 11354980  T
Q  218 tacg 221  Q
    ||||    
T  11354981 tacg 11354984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 24945005 - 24945158
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| ||||||||| | || ||| ||||||||||||||| ||||||||||||||||||| | |||||||||| |||| |||||||| || |    
T  24945005 ttgtttggatttgcaaaaagtgactcgagtggaatggaatacaatggaactcattccatccaataccaccaaaaccttcaa-ttttcattccccccaatt 24945103  T
Q  118 tgaggtgtatccaatggaagagagtaccataacaaaaaatattacatttttacccc 173  Q
    | ||||||||| |||||||  ||||  |||||| |||| |||||||||||||||||    
T  24945104 taaggtgtatcgaatggaatcgagtttcataac-aaaagtattacatttttacccc 24945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 26861473 - 26861272
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| | ||||    
T  26861473 ttgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccctccaaat 26861374  T
Q  118 tgaggtgtatccaatggaagagagtaccataacaaaaaatattacatttttaccccnnnnnnnnattttatctataacatgttccttcaactactgttct 217  Q
    || |||||||||||||||| |||||||| |||| ||||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||||    
T  26861373 tggggtgtatccaatggaatagagtaccgtaac-aaaaatattacatttttacccc-tgtttttattttatctgtaacatgttcctccaactactgttct 26861276  T
Q  218 tacg 221  Q
    ||||    
T  26861275 tacg 26861272  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 22405051 - 22405169
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| ||||||||||  | ||||||||| ||||| |   ||||| |||||||||||||||||||  ||  |||||||||||  ||||| || || |    
T  22405051 ttgtttggttttgtaaaaaaaggatggaatggaatggagtgtgatggaactcattccatccaataccaatcattccttcaattttccattccacccaatt 22405150  T
Q  118 tgaggtgtatccaatggaa 136  Q
    ||  |||||||||||||||    
T  22405151 tggagtgtatccaatggaa 22405169  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 3121243 - 3121314
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatcca 89  Q
    |||||||| |||| |||||  ||||||||||| ||||| |   ||||| |||||||||||||||||||||||    
T  3121243 ttgtttggttttgcaaaaaaagaatggaatggaatggagtgtgatggaactcattccatccaataccatcca 3121314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 46944061 - 46944128
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaatacca 85  Q
    |||||||| | |||||||| |||||||||||| ||||| |   ||||| |||||||||||||||||||    
T  46944061 ttgtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaactcattccatccaatacca 46944128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 21263697 - 21263579
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| ||||||||||  | ||||||||||||||| |   ||||| | |||||||||||||||||  ||  |||||||||||  |||||  | || |    
T  21263697 ttgtttggttttgtaaaaaagggatggaatgggatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccatccaatt 21263598  T
Q  118 tgaggtgtatccaatggaa 136  Q
    || |||||||| |||||||    
T  21263597 tggggtgtatcgaatggaa 21263579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 42117264 - 42117063
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| | ||||    
T  42117264 ttgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccctccaaat 42117165  T
Q  118 tgaggtgtatccaatggaagagagtaccataacaaaaaatattacatttttaccccnnnnnnnnattttatctataacatgttccttcaactactgttct 217  Q
    || |||||||||||||||| |||||||| |||| ||||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||||    
T  42117164 tggggtgtatccaatggaatagagtaccgtaac-aaaaatattacatttttacccc-tgtttttattttatctgtaacatgttcctccaactactgttct 42117067  T
Q  218 tacg 221  Q
    ||||    
T  42117066 tacg 42117063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 49741330 - 49741531
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||   ||||    
T  49741330 ttgtttggatttgcaaaaagcgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattcccttcaaat 49741429  T
Q  118 tgaggtgtatccaatggaagagagtaccataacaaaaaatattacatttttaccccnnnnnnnnattttatctataacatgttccttcaactactgttct 217  Q
    || |||||||||||||||| |||||||| |||| ||||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||||    
T  49741430 tggggtgtatccaatggaatagagtaccgtaac-aaaaatattacatttttacccc-tgtttttattttatctgtaacatgttcctccaactactgttct 49741527  T
Q  218 tacg 221  Q
    ||||    
T  49741528 tacg 49741531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 15581581 - 15581699
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| ||||||||||   |||||||||| ||||| |   ||||| | |||||||||||||||||||||  |   |||||||  |||||||| || |    
T  15581581 ttgtttggttttgtaaaaaagaaatggaatggaatggagtgtgatggaacccattccatccaataccatccattctcccaattttccattccccccaatt 15581680  T
Q  118 tgaggtgtatccaatggaa 136  Q
    || ||||||||||||||||    
T  15581681 tggggtgtatccaatggaa 15581699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 42365900 - 42366015
Alignment:
Q  21 tttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaattga 120  Q
    ||||| ||| |||||| |||||||||||| ||||| |   ||||| | |||||||||||||||||| ||  | | |||||||| |||||  | || |||     
T  42365900 tttggttttataaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaataccattcattcttccaatttttcattccatctaatttgg 42365999  T
Q  121 ggtgtatccaatggaa 136  Q
    ||||||||||||||||    
T  42366000 ggtgtatccaatggaa 42366015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 23473774 - 23473843
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatc 87  Q
    |||||||||| |||||||| |||||||||||| |||||| |  |||||   |||||||||| ||||||||    
T  23473774 ttgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattccatcccataccatc 23473843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 30813413 - 30813210
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaatttttt-attcccccaaaa 116  Q
    |||||| |||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||| |||    
T  30813413 ttgtttagatttgtaaaaaattaatggagtgggatggaatacaatggatctcatttcatccaataccaccgaaaccttcaattttttcattccccccaaa 30813314  T
Q  117 ttgaggtgtatccaatggaagagagtaccataacaaaaaatattacatttttaccccnnnnnnnnattttatctataacatgttccttcaactactgttc 216  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||  |||||||||||    
T  30813313 ttggggtgtatccaatggaatagagtaccataacaaaaaatattacatttttacccc-tttttttattttatctgtaacatgttcctcaaactactgttc 30813215  T
Q  217 ttacg 221  Q
    |||||    
T  30813214 ttacg 30813210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 14567859 - 14567983
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || |    
T  14567859 ttgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccatccaaaccttcaatttttcattccccccaatt 14567958  T
Q  118 tgaggtgtatccaatggaagagagt 142  Q
    || |||||||||||||||| |||||    
T  14567959 tggggtgtatccaatggaatagagt 14567983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 42029399 - 42029281
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| ||||||||||  | ||||||||| ||||| ||  ||||| | |||||||||||||||||  ||  |||||||||||| ||||| || || |    
T  42029399 ttgtttggttttgtaaaaaagggatggaatggaatggagtatgatggaacccattccatccaataccactcattccttcaatttttcattccacccaatt 42029300  T
Q  118 tgaggtgtatccaatggaa 136  Q
    || ||||||||||||||||    
T  42029299 tggggtgtatccaatggaa 42029281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 25909357 - 25909424
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaatacca 85  Q
    |||||||| ||||||| ||||||||||||||  ||| |||| |||||| |||||||||||||||||||    
T  25909357 ttgtttggttttgtaataagtgaatggaatgaaatgaaatataatggaactcattccatccaatacca 25909424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 11456760 - 11456642
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||||||||||||||  | ||||| ||| |||| | | || ||| |||||| ||||| || |||||  | ||||||||||||  ||||||| || |    
T  11456760 ttgtttggatttgtaaaaacaggatggagtggaatggtacataacggaactcatttcatcccattccatcatatccttcaatttttctttccccccaatt 11456661  T
Q  118 tgaggtgtatccaatggaa 136  Q
    |||| ||||||||||||||    
T  11456660 tgagatgtatccaatggaa 11456642  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 11414573 - 11414636
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaat 81  Q
    ||||||||||||||||| ||||||| |||||| |||||| | |||||| | |||||||| ||||    
T  11414573 ttgtttggatttgtaaatagtgaatagaatggaatggaacataatggagcccattccattcaat 11414636  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 27011196 - 27011314
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| ||||||||||  ||||||||||| ||||| |   ||||| | |||||||||||||||||  ||  | | |||||||| |||||  | || |    
T  27011196 ttgtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccatccaatt 27011295  T
Q  118 tgaggtgtatccaatggaa 136  Q
    || ||||||||||||||||    
T  27011296 tggggtgtatccaatggaa 27011314  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 25045409 - 25045505
Alignment:
Q  40 aatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaattgaggtgtatccaatggaa 136  Q
    |||||||||| |||||||   ||||| |||||||||||||||||||  ||  | | |||||||  ||||| || ||||||  |||||||||||||||    
T  25045409 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattggtgtgtatccaatggaa 25045505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 32233018 - 32233219
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| | ||||    
T  32233018 ttgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccctccaaat 32233117  T
Q  118 tgaggtgtatccaatggaagagagtaccataacaaaaaatattacatttttaccccnnnnnnnnattttatctataacatgttccttcaactactgttct 217  Q
    || |||||||||||||||| |||||||| |||| ||||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||||    
T  32233118 tggggtgtatccaatggaatagagtaccgtaac-aaaaatattacatttttacccc-tgtttttattttatctgtaacatgttcctccaactactgttct 32233215  T
Q  218 tacg 221  Q
    ||||    
T  32233216 tacg 32233219  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 30084937 - 30085033
Alignment:
Q  40 aatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaattgaggtgtatccaatggaa 136  Q
    |||||||||| |||||||   ||||| |||||||||||||||||||  ||  | | |||||||  ||||| || |||||| ||||||||||||||||    
T  30084937 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattggggtgtatccaatggaa 30085033  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 11617249 - 11617316
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaatacca 85  Q
    |||||||| |||| ||||| |||||||||||| ||||| |   ||||| |||||||||||||||||||    
T  11617249 ttgtttggttttgcaaaaaatgaatggaatggaatggagtgtgatggaactcattccatccaatacca 11617316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 15021741 - 15021808
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaatacca 85  Q
    |||||| ||||||| |||| |||||| ||||| |||||| ||||||||  ||||||||||| ||||||    
T  15021741 ttgttttgatttgttaaaaatgaatgaaatggtatggaacacaatggaattcattccatcccatacca 15021808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 4943542 - 4943660
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| ||||||||||  | ||||||||| ||||| |   ||||| | |||||||||||||||||  ||  |||||||||||  ||||| || || |    
T  4943542 ttgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccacccaatt 4943641  T
Q  118 tgaggtgtatccaatggaa 136  Q
    || ||||| ||||||||||    
T  4943642 tggggtgtttccaatggaa 4943660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 28219033 - 28219151
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| ||||||||||  | ||||||||| ||||| |   ||||| | |||||||||||||||||  ||  |||||||||||| ||||| || || |    
T  28219033 ttgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaatttttcattccacccaatt 28219132  T
Q  118 tgaggtgtatccaatggaa 136  Q
    || ||||||||||||||||    
T  28219133 tggggtgtatccaatggaa 28219151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 1499258 - 1499218
Alignment:
Q  96 caattttttattcccccaaaattgaggtgtatccaatggaa 136  Q
    |||||||||||| |||| || ||||||||||||||||||||    
T  1499258 caattttttatttcccccaatttgaggtgtatccaatggaa 1499218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 23417330 - 23417212
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| ||||||||||  ||||||||||| ||||| ||  ||||| | |||||||||||||||||  ||  | | |||||||| |||||  | || |    
T  23417330 ttgtttggttttgtaaaaaaggaatggaatggcatggagtatgatggaacccattccatccaataccactcattcttccaatttttcattccatccaatt 23417231  T
Q  118 tgaggtgtatccaatggaa 136  Q
    || ||||||||||||||||    
T  23417230 tggggtgtatccaatggaa 23417212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 35759780 - 35759866
Alignment:
Q  50 gatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaattgaggtgtatccaatggaa 136  Q
    ||||||||| |||||| |||||||||||||||||||  ||  | |||||||||| || || || ||| || ||||||| ||||||||    
T  35759780 gatggaatagaatggacctcattccatccaataccactcattcattcaatttttaatccctcccaaactggggtgtatgcaatggaa 35759866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 19625432 - 19625548
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaataccatccaaaccttcaattttttattcccccaaaat 117  Q
    |||||||| |||| |||||   |||||||||| |||||||   ||||| || ||||||||||||||||  ||  | | |||||||  ||||| || ||||    
T  19625432 ttgtttggttttgcaaaaatgtaatggaatggaatggaatgtgatggaactaattccatccaataccactcattcatccaattttccattcctcccaaat 19625531  T
Q  118 tgaggtgtatccaatgg 134  Q
    || ||||||||||||||    
T  19625532 tgtggtgtatccaatgg 19625548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 44233 - 44166
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaatacca 85  Q
    |||||||| |||||||||| |||||||||||| ||||| |   ||||| | |||||||||||||||||    
T  44233 ttgtttggttttgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaatacca 44166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 77954 - 77887
Alignment:
Q  18 ttgtttggatttgtaaaaagtgaatggaatgggatggaatacaatggatctcattccatccaatacca 85  Q
    |||||||| |||||||||| |||||||||||| ||||| |   ||||| | |||||||||||||||||    
T  77954 ttgtttggttttgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaatacca 77887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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