View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11111_low_12 (Length: 249)
Name: NF11111_low_12
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 43747817 - 43747601
Alignment:
| Q |
20 |
agtggtccctctaactgaacatacacacgcacacaaatacatataaaatggaaagaacagtggatgagtgttgcattttccatatatatagtaaactttg |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43747817 |
agtggtccctctaactgaacacacacacgcacacaaatacatataaaatggaaagaacagtggatgagtgttgcattttccatatatatagtaaactttg |
43747718 |
T |
|
| Q |
120 |
actttaaacatttggtggttgacgagaagtgatagggtcagagcaaattatccggctacattacaataccccgcgccttaataccttattaaatttttat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43747717 |
actttaaacatttggtggttgacgagaagtgatggggtccgagcaaattatccggctacattacaataccccgcgccttaataccttattaaatttttat |
43747618 |
T |
|
| Q |
220 |
gttggacctagttcatc |
236 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
43747617 |
gttcgacctagttcatc |
43747601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University