View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11111_low_15 (Length: 233)
Name: NF11111_low_15
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35516366 - 35516134
Alignment:
| Q |
1 |
cagaacgaaaaaggaacatagaaatcctggactctttattgaaggaagtatcatctcaaatttttcgggctgggggtattgacagaccatttattactaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35516366 |
cagaacgaaaaaggaacatagaaatcctggactctttattgaaggaagtatcatctcaaatttttcgggctgggggtattgacagaccatttattactaa |
35516267 |
T |
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| Q |
101 |
gcgtcgatctagaatgtgcgtgggtatcagggcttcgtataggtatttgcttccagaaggtatagttctgaatgccagcagctctggagcaacatacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35516266 |
gcgtcgatctagaatgtgcgtgggtatcagggcttcgtataggtatttgcttccagaaggtatagttctgaatgccagcagctctggagcaacatacttt |
35516167 |
T |
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| Q |
201 |
atggaaccgaaagaagcaatagatttgaacaac |
233 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
35516166 |
atggaaccaaaagaagcaatagatttgaacaac |
35516134 |
T |
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