View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11111_low_16 (Length: 218)
Name: NF11111_low_16
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10011135 - 10011352
Alignment:
| Q |
1 |
tttggtttttatggaagaaagaccaatcggacctatgnnnnnnntatagaagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaa |
100 |
Q |
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| T |
10011135 |
tttggtttttatggaagaaagaccaatcgaacctatgaaaaaaatatagaagagaggtgctcctgttttggagaattggacataaaaaattttccttaaa |
10011234 |
T |
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| Q |
101 |
aattgtctttttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagttgga |
200 |
Q |
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| T |
10011235 |
aattgtctttttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagttgga |
10011334 |
T |
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| Q |
201 |
catcaaattcatatcagt |
218 |
Q |
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|||||||||||||||||| |
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| T |
10011335 |
catcaaattcatatcagt |
10011352 |
T |
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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 561565 - 561652
Alignment:
| Q |
50 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
137 |
Q |
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| T |
561565 |
aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga |
561652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 17688868 - 17688782
Alignment:
| Q |
50 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
137 |
Q |
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| T |
17688868 |
aagagaggtgttcctgttttggagaattagacatcaaatttttt-ctttaaaattgtccttttcttctatattctttctcgtttctga |
17688782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 1678868 - 1678954
Alignment:
| Q |
50 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
137 |
Q |
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|||||||||| ||||||||||||||||| ||||| |||| || ||||||||| |||| |||||||||||||||||||||||| |
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| T |
1678868 |
aagagaggtgttcctgttttggagaattagacatcaaattttttc-ttcaaaattgtccttttcttctatattctttctcgtttctga |
1678954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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