View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11111_low_3 (Length: 467)
Name: NF11111_low_3
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 276 - 452
Target Start/End: Original strand, 8112439 - 8112615
Alignment:
| Q |
276 |
acaatatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagtgttctttaaataagctttagatctttaaaatgcagtaatct |
375 |
Q |
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| T |
8112439 |
acaatatacaattgctacctatttactaacaaatcaagagatataacgtagtcaaaagtgttctttaaataagctttagatctttaaaatgcagtaatct |
8112538 |
T |
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| Q |
376 |
ccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggcacaaagaggcaaaagaccacagg |
452 |
Q |
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| T |
8112539 |
ccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggcacaaagaggcaaaagaccacagg |
8112615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 329 - 450
Target Start/End: Original strand, 8107908 - 8108029
Alignment:
| Q |
329 |
aaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttgg |
428 |
Q |
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| T |
8107908 |
aaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaagaaaaaataagatcaattcccttttgaactattgatagaatttgg |
8108007 |
T |
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| Q |
429 |
cacaaagaggcaaaagaccaca |
450 |
Q |
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| T |
8108008 |
cacaaagaggcaaaagaccaca |
8108029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 8107535 - 8107636
Alignment:
| Q |
18 |
tgtatcatgtgtagaggacgacgacaactactaatggtattttcaatgaaaga---agatcgttacataggttgtttctgatctacaaaataaactcaaa |
114 |
Q |
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| T |
8107535 |
tgtatcatgtgtagaggacgacgacaattacgaatggtattttcaatgaaagaattagatcgtcacatagcgtgtttctgatctacaaaataaactcaaa |
8107634 |
T |
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| Q |
115 |
ac |
116 |
Q |
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| T |
8107635 |
ac |
8107636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 8112180 - 8112286
Alignment:
| Q |
18 |
tgtatcatgtgtagaggacg---acgacaactactaatggtattttcaatgaaaga---agatcgttacataggttgtttctgatctacaaaataaactc |
111 |
Q |
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| T |
8112180 |
tgtatcatgtgtagaggacgacgacgacaactacgaatggtattttcaatgaaagaattagatcgtcacatagcgtgtttctgatctataaaataaactc |
8112279 |
T |
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| Q |
112 |
aaaacgg |
118 |
Q |
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| T |
8112280 |
aaaacgg |
8112286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 8107805 - 8107863
Alignment:
| Q |
276 |
acaatatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagt |
334 |
Q |
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| T |
8107805 |
acaatatacaattgctacctatttactaacaaatcaagagatataacgcagtcaaaagt |
8107863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 8094219 - 8094302
Alignment:
| Q |
345 |
taagctttagatctttaaaatgcagtaatctccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggc |
429 |
Q |
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| T |
8094219 |
taagctttagatctttaaaatacagtaatctccaagaaa-aaaaattaagatcaatcatcttttgaactgttgatagaatttggc |
8094302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 8093912 - 8093973
Alignment:
| Q |
55 |
tattttcaatgaaagaagatcgttacataggttgtttctgatctacaaaataaactcaaaac |
116 |
Q |
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| T |
8093912 |
tattttcaatgaaataagatcgtcgcatagcatgttcctgatctacaaaataaactcaaaac |
8093973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 8112373 - 8112420
Alignment:
| Q |
209 |
gttcgccggtcatggatagtccacccaaaaaagatagatggtcttgtag |
257 |
Q |
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| T |
8112373 |
gttcgcgggtcatggatagtc-acccaaaaaagatagatggtgttgtag |
8112420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 30878977 - 30878923
Alignment:
| Q |
280 |
tatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagt |
334 |
Q |
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| T |
30878977 |
tatacaatttctatctatttgctaataaatcaagagatataacacagtcaaaagt |
30878923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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