View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11111_low_5 (Length: 340)
Name: NF11111_low_5
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 39266020 - 39265726
Alignment:
| Q |
20 |
ttacagcactgccatgtgagaaattgagaagagataaaatagggaccttgattttattttctttatctatgtaaccnnnnnnnatatatacattgttctg |
119 |
Q |
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| T |
39266020 |
ttacagcactgccatgtgagagattgagaagagataaaatatggacctt-attttattttctttatctatgtaacctttttt-atatatacattgttctg |
39265923 |
T |
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| Q |
120 |
aattatcttttgaaagaataggtttgtaagattgatccataactgataattttttattgtatgcagatcaatccaaatatgtattgtgttttgttggtgc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39265922 |
aattatcttttgaaagaataggtttgtaagattgatccataactgataattttttattgtatgcagatcaatccaaatatgtattgtgttttgctggtgc |
39265823 |
T |
|
| Q |
220 |
tctgacatccacatggagaagtagcttcgtaggattggtccaataactgatacnnnnnnnnagcagaaagtgtgactgttgagaattttcaattgag |
316 |
Q |
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| T |
39265822 |
tctgacatccacatggagaagtagcttcgtaggattgatccaataactgatacttttttttagcagaaagtgtgactgttgagaattttcaattgag |
39265726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 45638568 - 45638447
Alignment:
| Q |
36 |
tgagaaattgagaagagataaaatagggaccttgattttattttctttatctatgtaaccnnnnnnnatatatacattgttctgaattatcttttgaaag |
135 |
Q |
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| T |
45638568 |
tgagagattgagaagagataaaatagggaccttgattttattttctttatctatgtaa-cattttttagatatacgttcttatgaattatcttttgaaat |
45638470 |
T |
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| Q |
136 |
aataggtttgtaagattgatcca |
158 |
Q |
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| T |
45638469 |
aataggtttgtaagattgatcca |
45638447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 22964940 - 22965089
Alignment:
| Q |
115 |
ttctgaattatcttttgaaagaataggtttgtaagattgatc--cataactgataattttttattgtatgcagatcaatccaaatatgtattgtgttttg |
212 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||| |||||| || | ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22964940 |
ttctggattatattttgaaagaataggtttgtaagattgatctagataactaat-actttttattggatgcagatcaatccaaatatgtattgtgttttg |
22965038 |
T |
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| Q |
213 |
ttggtgctctgacatccacatggagaagtagcttcgtaggattggtccaataactgatac |
272 |
Q |
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| T |
22965039 |
ttggtactctgac---------gagaagtagtttcgtaggattgatccaataaccgatac |
22965089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 38954978 - 38954875
Alignment:
| Q |
115 |
ttctgaattatcttttgaaagaataggtttgtaagattgatcca--taactgataattttttattgtatgcagatcaatccaaatatgtattgtgttttg |
212 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
38954978 |
ttctggattatattttgaaagaataggtttgtaagattgatccagataactaatacttttt-attggatgcagatcaatccaaatatgtattgtgttttg |
38954880 |
T |
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| Q |
213 |
ttggt |
217 |
Q |
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||||| |
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| T |
38954879 |
ttggt |
38954875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 43720707 - 43720752
Alignment:
| Q |
42 |
attgagaagagataaaatagggaccttgattttattttctttatct |
87 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
43720707 |
attgagaagagataaaatatggaccttgaatttattttctttatct |
43720752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 28022133 - 28022178
Alignment:
| Q |
42 |
attgagaagagataaaatagggaccttgattttattttctttatct |
87 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
28022133 |
attgagaagagataaaatatggaccttgaatttattttctttatct |
28022178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 28022314 - 28022350
Alignment:
| Q |
236 |
agaagtagcttcgtaggattggtccaataactgatac |
272 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |
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| T |
28022314 |
agaagtagctttgtaggattgatccaataactgatac |
28022350 |
T |
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