View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11111_low_9 (Length: 266)
Name: NF11111_low_9
Description: NF11111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11111_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 24462257 - 24462512
Alignment:
| Q |
11 |
cacagattccaacactgagttccatccacaatgagtcagaaatgcaccaatagctctatgtctcaatatcatcacttgtggggcccagcctctaataaca |
110 |
Q |
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| T |
24462257 |
cacagattccaacactgagttccatccacaatgagtcaaaaatgcaccaacagctctatgtctcaatatcatcacttgtggggcccagcctctaataaca |
24462356 |
T |
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| Q |
111 |
agacctctaccaagaaaagcatcttcaaaatccaacccttcannnnnnnnnnnnnnnnnnnnnattgaccatataaaatggactccactttttaacaacc |
210 |
Q |
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| T |
24462357 |
agacctctaccaagaaaagcatcttcaaaatccaacccttcattttcattttttgtttcttttattgaccatataaaatggactccactttttaacaacc |
24462456 |
T |
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| Q |
211 |
cagatgcaatagccaccgtttgatccttgttgagaatagtttggcttccaatacac |
266 |
Q |
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| T |
24462457 |
cagatgcaatagccaccgtttgatccttgttgagaatagtttggcttccaaaacac |
24462512 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 20156865 - 20156941
Alignment:
| Q |
30 |
ttccatccacaatgagtcagaaatgcaccaatagctctatgtctcaatatcatcacttgtggggcccagcctctaat |
106 |
Q |
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| T |
20156865 |
ttccatccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtggagcccaacctctaat |
20156941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 18989568 - 18989525
Alignment:
| Q |
28 |
agttccatccacaatgagtcagaaatgcaccaatagctctatgt |
71 |
Q |
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| T |
18989568 |
agttccatccacaatgagtcacaaatgctccaatagctttatgt |
18989525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 11019145 - 11019104
Alignment:
| Q |
17 |
ttccaacactgagttccatccacaatgagtcagaaatgcacc |
58 |
Q |
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| T |
11019145 |
ttccaacacggagttccatccacaatgagtcacaaatccacc |
11019104 |
T |
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