View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11112_high_3 (Length: 522)
Name: NF11112_high_3
Description: NF11112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11112_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 10 - 504
Target Start/End: Original strand, 4274434 - 4274929
Alignment:
| Q |
10 |
atgagatgaactgagtcagtagataagaataaagggaataacataaatttttccatttacaagactcaacctcatatcgtacttaggagcaccaaacttt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4274434 |
atgacatgaactgagtcagtagataagaataaagggaataacataaatttttccatttacaagattcaacctcatatcgtacttaggagcaccaaacttt |
4274533 |
T |
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| Q |
110 |
cttgccacttgaaccaacattcgtcggtaaatttaaagatctttgaaatgacaatcgtaacattaaggatagtaatggattgccacaatatcaaaa-ctt |
208 |
Q |
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| T |
4274534 |
cttgccacttgaaccaacattcgtcggtaaatttaaagatctttgaaatgacaatcgtaacattaaggatagtaatggattgccacaatatcaaaaactt |
4274633 |
T |
|
| Q |
209 |
agagatcattacaaatcatgattgcaattgaaaatgcattagcaacaatcacattaatttgtgatttcatacaatatgtaggattgtatgaatcaccaca |
308 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274634 |
agagatcattacaaatcatgattgtaattgaaaatgcattagcaacaatcacattaatttgtgatttcatacaatatgtaggattgtatgaatcaccaca |
4274733 |
T |
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| Q |
309 |
ataataacggtaagacataatcgcaatcacaatcgtgactacaacacatcaattacaataacaatcataaacattgacaaaattcatgaatattaaatca |
408 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274734 |
ataataacggtaagacataatcgcaatcacaatcgcgactacaatacatcaatcacaataacaatcataaacattgacaaaattcatgaatattaaatca |
4274833 |
T |
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| Q |
409 |
ttgtaagaaagaaagaaaacctcggggtgataacgaattcctcctttcataggaccacgtgcattgtcatgttggatccgaaaaccgacgtatgaa |
504 |
Q |
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| T |
4274834 |
ttgtaagaaagaaagaaaacctcggggtgataacgaattcctcctttcataggaccacgtgcattgtcatgttggatccgaaaaccgacgtatgaa |
4274929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 424 - 487
Target Start/End: Complemental strand, 38823327 - 38823264
Alignment:
| Q |
424 |
aaaacctcggggtgataacgaattcctcctttcataggaccacgtgcattgtcatgttggatcc |
487 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
38823327 |
aaaacctcagggtgataacgaattcctcctttcattggaccacgagcattgtcatgttggatcc |
38823264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 424 - 487
Target Start/End: Complemental strand, 41209785 - 41209722
Alignment:
| Q |
424 |
aaaacctcggggtgataacgaattcctcctttcataggaccacgtgcattgtcatgttggatcc |
487 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
41209785 |
aaaacctcagggtgataacgaattcctcctttcattggaccacgagcattgtcatgttggatcc |
41209722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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