View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11112_high_7 (Length: 250)
Name: NF11112_high_7
Description: NF11112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11112_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29087117 - 29086879
Alignment:
| Q |
1 |
aatttcttattcttattcttttgttaaaaagtaattttatgacaatccatgtctatcattctcaatttttaaaaaataaacaagacaatccatatctctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29087117 |
aatttcttattcttattcttttgttaaaaagtaattttatgacaatccatgtctatcatgctcaatttttaaataataaacaagacaatccatatctctt |
29087018 |
T |
|
| Q |
101 |
ttaatatggaccatgaaaatagagtgtatagtttgtaattatgcataattcattactgggtcaacatgacctttttcaagcaaaaataaataatatatca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29087017 |
ttaatatggaccataaaaatagagtgtatagtttgtaattatgcataattcattattgggtcaacatgacctttttcaagccaaaataaataatatatcg |
29086918 |
T |
|
| Q |
201 |
cactgtattagtcaatgccatgatgaattctatattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29086917 |
cactgtattagtcaatgccatgatgaattctatattcat |
29086879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University