View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11112_low_1 (Length: 752)

Name: NF11112_low_1
Description: NF11112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11112_low_1
NF11112_low_1
[»] chr8 (2 HSPs)
chr8 (17-672)||(4066850-4067484)
chr8 (385-534)||(4062591-4062743)


Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 17 - 672
Target Start/End: Original strand, 4066850 - 4067484
Alignment:
Q  17 actttgaactctatgtagaaggttaacggtctcggggtcaaacataaacggtgttaaaacatgctgattgtcagaactaaaaagtgactatatagaccaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4066850 actttgaactctatgtagaaggttaacggtctcggggtcaaacataaacggtgttaaaacatgctgattgtccgaactaaaaagtgactatatagaccaa 4066949  T
Q  117 aaacaaacttgaagataattttagttgatagaatttcattagtaattgttggatcacaagggggagtcggggatcatatccacattggacttaatacatg 216  Q
    |||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4066950 aaacaaacttgaagataattttagt------------------aattgttggatcacaagggggagtcggggatcatatccacattggacttaatacatg 4067031  T
Q  217 tgagaaagacattacactttataaaacgagtttattgatccttttacttataacgatgagggatttataagtcgcacttactgcacaacgatgctaataa 316  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4067032 tgagaaagacattacactttaaaaaacgagtttattggtccttttactaataacgatgagggatttataagtcgcacttactgcacaacgatgctaataa 4067131  T
Q  317 cataattaaccatacaatnnnnnnnnnttagcgagaaaagtgaaaagtgnnnnnnnnnnnnnnncagttgagcaatggatttggggaagaggtggtggtg 416  Q
    ||||||||||||||||||         ||||||||||||||||||||||               ||||||||||||||||||||||||||| ||||||||    
T  4067132 cataattaaccatacaataaaaaaaa-ttagcgagaaaagtgaaaagtgcatacacacacac--cagttgagcaatggatttggggaagagatggtggtg 4067228  T
Q  417 acgtgcgaaggaatcttgatgaataggagctttggtttgaaagtgaaaatgtgagagaaccttacgatcaggtaagggtttaagtaacaactcctcagaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4067229 acgtgcgaaggaatcttgatgaataggagctttggtttgaaagtgaaaatgtgagagaaccttacgatcaggtaagggtttaagtaacaactcctcagaa 4067328  T
Q  517 aattcttcttctactacttttgccgaagacgatgatagaatcattgaaaaaaggagaatgaaagagagaatcgttgctggagcaaaagtcatcgttgctt 616  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4067329 aattcttcttctactacttttgctgaagacgatgatagaatcattgaaaaaaggagaatgaaagagagaatcgttgctggagcaaaagtcatcgttgctt 4067428  T
Q  617 gctaactttggaactctgctgtctgtttgagtagtggtgtgtacagactactaata 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4067429 gctaactttggaactctgctgtctgtttgagtagtggtgtgtacagactaataata 4067484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 385 - 534
Target Start/End: Original strand, 4062591 - 4062743
Alignment:
Q  385 tgagcaatggatttggggaagaggtggtggtgacgtgcgaaggaatcttgatgaataggag---ctttggtttgaaagtgaaaatgtgagagaaccttac 481  Q
    |||| |||||||||||||||||| ||||| ||||| |||||||| |||| |||||||||||   ||| |||||| || |||||||| | |||||| || |    
T  4062591 tgagaaatggatttggggaagagatggtgatgacgggcgaaggagtcttcatgaataggaggagcttcggtttggaaatgaaaatgcgcgagaactttgc 4062690  T
Q  482 gatcaggtaagggtttaagtaacaactcctcagaaaattcttcttctactact 534  Q
    |||| |||| ||||||||||| ||| ||||| ||||||||||||||| |||||    
T  4062691 gatctggtaggggtttaagtagcaattcctctgaaaattcttcttctgctact 4062743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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