View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11112_low_2 (Length: 557)
Name: NF11112_low_2
Description: NF11112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11112_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Complemental strand, 14427255 - 14426727
Alignment:
| Q |
17 |
actttgatagttaatttacataactaaatgtgttagttcaattttcttcttatgatgttatttttcattatagggtcgatttgagattttatctctatca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14427255 |
actttgatagttaatttacataactaaatgtgttagttcaattttcttcttatgatgttatttttcattacagggtcgatttgagattttatctctatca |
14427156 |
T |
|
| Q |
117 |
ggaatgttagaagaatttgacaacaaaaatggctttaagacaatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14427155 |
ggaatgttagaagaatttgacaacaaaaatggctttaagacaatgggttactttaaggtgtctttagtggatcctaatttaaacgttttgggaggtgtag |
14427056 |
T |
|
| Q |
217 |
ttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgattttannnnnnnnnaaaagcaaaatgtgaat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14427055 |
ttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgatttt---ttttttttaaagcaaaatgtgaat |
14426959 |
T |
|
| Q |
317 |
gtaagttcttgggtgtctatagtattttctacacgacgaattgagcaaattttatggcaccgatttatgactttttaagaatcattttcaggttatagtg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14426958 |
gtaagttcttgggtgtctatagtattttctgcacgacgaattgagcaaattttgtgggaccgatttatgactttttaagaatcattttcaggttatagtg |
14426859 |
T |
|
| Q |
417 |
ggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggccttcttcaatgacaatatctcaatttgctgctcctgggactccaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
14426858 |
ggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggtcttcttcaatgacgatatctcaatttgctgctcctaggactccaa |
14426759 |
T |
|
| Q |
517 |
ctagtgctgctgcctctcaagggccttcatct |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
14426758 |
ctagtgctgctgcctctcaagggccttcatct |
14426727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 524
Target Start/End: Complemental strand, 14417194 - 14416697
Alignment:
| Q |
21 |
tgatagttaatttacataactaaatgtgtta--gttcaattttcttcttatgatgttatttttcattatagggtcgatttgagattttatctctatcagg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||| | |||||| |||||||||||||||||| ||||| |
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|
| T |
14417194 |
tgatagttgttttacataactaaatgtgtttttgttcatttttctttctatgatgttatttttcatcacagggtcaatttgagattttatctctctcagg |
14417095 |
T |
|
| Q |
119 |
aatgttagaagaatttgacaacaaaaatggctttaagacaatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagtt |
218 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| |||| |||||||| ||||||| ||||||| ||||||| ||| |||| ||||||||||| |
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|
| T |
14417094 |
aatgttagaagtatttgacaacaataatggctttaagagaatgaattactttacggtgtctctagtggaacctaattcaaatgtttttggaggtgtagt- |
14416996 |
T |
|
| Q |
219 |
gctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgattttannnnnnnnnaaaagcaaaatgtgaatgt |
318 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||||||| ||||| || ||||||||||||||| | ||||| | |||||||| |
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|
| T |
14416995 |
--tgataagcttattgctgcatcattggtaaaggtatttctctcaagtgatacataatttatgttgatttt-------cttataagcatattgtgaatgc |
14416905 |
T |
|
| Q |
319 |
aagttcttgggtgtctatagtattttctacacgacgaattgagcaaa-ttttatggcaccga-tttatgactttttaagaatcattttcaggttatagtg |
416 |
Q |
| |
|
|||||||||||||||||| ||||||||| || || |||||| ||||| |||| ||||| ||| |||||||||||||||||||||||||||||| | |||| |
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|
| T |
14416904 |
aagttcttgggtgtctattgtattttctgcatgatgaattgtgcaaatttttgtggcatcgattttatgactttttaagaatcattttcaggtcaaagtg |
14416805 |
T |
|
| Q |
417 |
ggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggccttcttcaatgacaatatctcaatttgctgctcctgggactccaa |
516 |
Q |
| |
|
| | ||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||||| |
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|
| T |
14416804 |
gcttgttttactttggatgacaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaatatcccaatttgctgcttttgggactccaa |
14416705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 3410187 - 3409917
Alignment:
| Q |
21 |
tgatagttaatttacataactaaatgtgtt--agttcaattttcttcttatgatgttatttttcattatagggtcgatttgagattttatctctatcagg |
118 |
Q |
| |
|
|||||||| ||||| ||||||| |||||| |||| ||||||||| | |||||| ||||| || |||||||||||||| || |||| |||||||| |
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|
| T |
3410187 |
tgatagttgatttatataactacttgtgttttagtttaattttcttactgtgatgtatttttttatcccagggtcgatttgagcttgtatccctatcagg |
3410088 |
T |
|
| Q |
119 |
aatgttagaagaatttgacaacaaaaatggctttaagacaatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagtt |
218 |
Q |
| |
|
|||||||||| || ||||||||| | ||| | ||| | ||||||| |||||||||||||| | |||| |||| ||||| || |||||||||||| || |
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|
| T |
3410087 |
catgttagaagtatgtgacaacaatagtggttgtaaaagaatgggtaactttaaggtgtctctggtgggtcctgatttacgccctttgggaggtgtggtg |
3409988 |
T |
|
| Q |
219 |
gctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgatttt |
289 |
Q |
| |
|
||| ||||||||||||| ||||| | ||||||||||| | |||||||||||| ||||||||||||||| |
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|
| T |
3409987 |
gctaataagcttattgcagcatcttcagtaaaggtattgttttcaaatgataaacaatttatgttgatttt |
3409917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 158 - 289
Target Start/End: Original strand, 4867157 - 4867288
Alignment:
| Q |
158 |
aatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtattt |
257 |
Q |
| |
|
|||| ||||||| ||||||||| |||| | ||| ||| | |||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
4867157 |
aatgagttacttcaaggtgtctctagtaaaccctgattcacgccttttggtaggtgtagttgctgataagtttattgcggcatcattagtaaaggtattg |
4867256 |
T |
|
| Q |
258 |
ctctcaaatgataaatgatttatgttgatttt |
289 |
Q |
| |
|
|||||||||||| || |||||||| |||||| |
|
|
| T |
4867257 |
ttctcaaatgatagataatttatgtagatttt |
4867288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 152 - 289
Target Start/End: Original strand, 4244582 - 4244719
Alignment:
| Q |
152 |
taagacaatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaag |
251 |
Q |
| |
|
||||| |||| || |||||||||||||| || | ||| |||| | ||||||||| ||| ||||||| ||||||||||||||||||||| || |||||| |
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|
| T |
4244582 |
taagaaaatgagtaactttaaggtgtctctacttactccgaattcacaccttttggcaggcgtagttgttgataagcttattgcggcatcattggtaaag |
4244681 |
T |
|
| Q |
252 |
gtatttctctcaaatgataaatgatttatgttgatttt |
289 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
4244682 |
gtattgttctcatatgataaacaatttatgttgatttt |
4244719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 269
Target Start/End: Original strand, 4813998 - 4814117
Alignment:
| Q |
150 |
tttaagacaatgggttactttaaggtgtctttagtggatcctaatttaaaccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaa |
249 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | | || || | || | |||||||| ||| ||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
4813998 |
tttaagaaaatgggttacttcaaggtgtctctcgagggtcatggttcacgccttttggcaggcgtagttgctgataagcttattgcagcatcattagtaa |
4814097 |
T |
|
| Q |
250 |
aggtatttctctcaaatgat |
269 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
4814098 |
aggtattgctctcaaatgat |
4814117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 4867398 - 4867451
Alignment:
| Q |
389 |
ttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaa |
442 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
4867398 |
ttttaagaatcatttccaggtcatagtgggtagttttacattggatggcaaaaa |
4867451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 4251271 - 4251360
Alignment:
| Q |
200 |
ccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgatttt |
289 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||| || |||||||||| ||| |||||||| | ||||||||||||||| |
|
|
| T |
4251271 |
ccttttgggggtcgtagttgctgataagcttatcgcggcatcgttagtaaaggtatcgttcttaaatgatatacaatttatgttgatttt |
4251360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 516
Target Start/End: Complemental strand, 3409833 - 3409698
Alignment:
| Q |
381 |
ttatgactttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggccttcttcaa |
480 |
Q |
| |
|
||||||||| |||| |||||||| ||||| | |||||||||||||||||||||| || || |||||| | |||| ||||| | |||||||||||| |
|
|
| T |
3409833 |
ttatgacttattaaaaatcatttacaggtcactgtgggtagttttactttggatgttaagaaggctagctcgaataacttgaaaattgggccttcttcag |
3409734 |
T |
|
| Q |
481 |
tgacaatatctcaatttgctgctcctgggactccaa |
516 |
Q |
| |
|
|| || || ||| |||||||| |||||||||||| |
|
|
| T |
3409733 |
tgccatcgtcccaaattgctgcttctgggactccaa |
3409698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 7159055 - 7159144
Alignment:
| Q |
200 |
ccttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatgataaatgatttatgttgatttt |
289 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||| ||| ||||||||| || ||| ||||||||||| |
|
|
| T |
7159055 |
ccttttggaaggtgtagttgctgataagcttattgcagcatcattggtaaaggtattgctcacaaatgatagataattcatgttgatttt |
7159144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 7159253 - 7159307
Alignment:
| Q |
389 |
ttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaat |
443 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| || |||||||||||||| |||||| |
|
|
| T |
7159253 |
ttttatgaatcatttacaggtcatagtgggcagctttactttggatggaaaaaat |
7159307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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