View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11112_low_4 (Length: 286)
Name: NF11112_low_4
Description: NF11112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11112_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 32908502 - 32908246
Alignment:
| Q |
11 |
cagagacactgctatccacgtaaaagtagagtatgaacaagacaacattaggttcaatcaaatgtacaacaacacttacaatgctaacatgcatcaccag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32908502 |
cagagacactgctatccacgtaaaagtagagtatgaacaagacaacattaggttcaatcaaatgtacaacaacacttacaatgctaacatgcatcaccag |
32908403 |
T |
|
| Q |
111 |
gttcatcatcaactcaatctcaagagagaaagtaaaaccaaaagtaatttgcaaatccaaacaaaaaatgtattattcattacatgcacatccaattaat |
210 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32908402 |
gttcatcaccaactcaatctcaagagagaaagtaaaaccaaaagtaatttgcaaatccaaacaaaaaatgtattattcattacatgcacatccaattaat |
32908303 |
T |
|
| Q |
211 |
taattggcttaatatataacaaccgcatgtatatctgccaattttggtcgctaattt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32908302 |
taattggcttaatatataacaaccgcatgtatatctgccaattttggtggctaattt |
32908246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University