View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11113_low_1 (Length: 588)
Name: NF11113_low_1
Description: NF11113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11113_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 30517309 - 30516737
Alignment:
| Q |
1 |
cagctcattattaaggggtaacattggtaattacaccaacataatgggaacaacatctctagtccctaacaataacatgccaaaccattttccttcaatt |
100 |
Q |
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| T |
30517309 |
cagctcattattaaggggtaacattggtaattacaccaacataatgggaacaacatctctagtccctaacaataacatgccaaaccattttccttcaatt |
30517210 |
T |
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| Q |
101 |
ttcaaaccaatttcaactcctgnnnnnnnnnnnnnnnnnntt---gaatcaaccaatcaaactagaggactatccctttggatgaatcaaacttctcatt |
197 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517209 |
ttcaaaccaatttcaactcctgatcatcatcatcatcatcatcatgaatcaaccaatcaaactagaggactatccctttggatgaatcaaacttctcatt |
30517110 |
T |
|
| Q |
198 |
ctcaacctcatgaaacaatgataaccaccaccaatggaaattctagtttgcatgagattcatcaacaaattgactcatcttcaagagaaattatgtatgg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |
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| T |
30517109 |
ctcaacctcatgaaacaatgataaccaccaccaatggaaattctagtttgcatgagattcaacaacaacttgactcatcatcaagagaaattatgtatgg |
30517010 |
T |
|
| Q |
298 |
tggaaatgagaaccctccaccatattctaataattatcagctaaattgggtttttggaactaaactttcaaacaattgcagccaagaattaattactagt |
397 |
Q |
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| T |
30517009 |
tggaaatgagaaccctccaccatattctaataattatcagctaaattgggtttttggaactaaactttcaaacaattgcagccaagaattaattactagt |
30516910 |
T |
|
| Q |
398 |
actacaacttcacttccactaggaaacattaatgttaatgttaaggatgtttctcatgatgctacaagtcaacaaatttcttccttgtacagctcacaac |
497 |
Q |
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| T |
30516909 |
actacaacttcacttccactaggaaacattaatgttaatgttaaggatgtttctcatgatgctacaagtcaacaaatttcttccttgtacagctcacaac |
30516810 |
T |
|
| Q |
498 |
accaaatatcacatcaaacatcttcagcaaacatgtcagctacagctttgttacaaaaagctgctcaaattgg |
570 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30516809 |
accaaatatcacatcaaacatcttcagcaaacatgtcagctacagctttgttacaaaaagctgctcaaattgg |
30516737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 477 - 570
Target Start/End: Complemental strand, 38894629 - 38894530
Alignment:
| Q |
477 |
cttccttgtacagctcacaacaccaa-----atatca-catcaaacatcttcagcaaacatgtcagctacagctttgttacaaaaagctgctcaaattgg |
570 |
Q |
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|||||||||| ||||||||||||||| || ||| ||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
38894629 |
cttccttgtatagctcacaacaccaatcacaatctcatcatcaaacaacctcagcaaacatgtcagcaacagctttgttgcaaaaagctgctcaaattgg |
38894530 |
T |
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