View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11113_low_14 (Length: 244)
Name: NF11113_low_14
Description: NF11113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11113_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43615139 - 43615364
Alignment:
| Q |
1 |
actgtgtgaagaataatataatcgacccataagtagatgtagggcatgaatgatctaactgagatcaaaattctgaaacaacatggtgcaatcctgagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43615139 |
actgtgtgaagaataatataatcgacccataagtagatgtagggcatgcatgatctaactgagatcaaaattctgaaacaacatggtgcaatcctgagca |
43615238 |
T |
|
| Q |
101 |
atcttgagtagggtagatttcaagaacagtgaaatcacagtggggcaggtaagaaaatgaaggaggagtaatgaaggactgcatggagcgttgtgggcaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43615239 |
atcttgagtagggtagattgcaagaacagtgaaatcacagtggggcaggtaagaaaatgaaggaggagtaatgaaggactgcatggagcgttgtgggcaa |
43615338 |
T |
|
| Q |
201 |
ggtattgaaaattgaaagggaataga |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43615339 |
ggtattgaaaattgaaagggaataga |
43615364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University