View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11113_low_3 (Length: 533)
Name: NF11113_low_3
Description: NF11113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11113_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 44966669 - 44966151
Alignment:
| Q |
1 |
aaagaaagaagtatatagtggaatccgcgtccactttgaagtgtgaatgacagcaaccaccaaatacataaataccaattgatttctctagctagctacc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44966669 |
aaagaaagaagtatatagtggaatccgcgtccactttgaagtgtgaatgacagcaaccaccaaacacataaataccaattgatttctctagctagctacc |
44966570 |
T |
|
| Q |
101 |
gtcactatccaatatcctcactcaccatgaattttctttttatataaataaatatatttgattggattcaatttaggttaaatacttttccaatagatag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
44966569 |
gtcactatccaatatcctcactcaccatgaattttctttttatataaataaatatatttgattggattcaatttaggttaaatacttttcaaatagatag |
44966470 |
T |
|
| Q |
201 |
cggttgcactttgctaaattgaactaaagtgggaccaaacatgcattgactgagc--------agctagctagctctgagattgnnnnnnnnnnnnnnnn |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44966469 |
cggttgcactttgctaaattgaactaaagtgggaccaaacatgcattgactgagcagcttgctagctagctagctctgagattgatatatataatatata |
44966370 |
T |
|
| Q |
293 |
nnatgttgggttgctagataccttgtccaattaatcaggaaattaaaatacagttcatgtggcactagatatatccacatgtatatattcttagtttacc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44966369 |
taatgttgggttgctagataccttgtccaattaatcaggaaattaaaatacagttcatgtggcactagatatatccacatgtatatattcttagtttatc |
44966270 |
T |
|
| Q |
393 |
nnnnnnnnnnnnnnnnnnngtgtctatatatagatattgagaagggtaaggtgtcaatttgaacatgacatacatataagtagcaaggcatgtagtatgt |
492 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44966269 |
aaataaataaaaataaaaagagtctatatatagatattgagaagggtaaggtgtcaatttgaacatgacatacatataagtagcaaggcatgtagtatgt |
44966170 |
T |
|
| Q |
493 |
ggtattagaaaaaaggtag |
511 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
44966169 |
ggtattagaaaaaaggtag |
44966151 |
T |
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