View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11113_low_6 (Length: 358)

Name: NF11113_low_6
Description: NF11113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11113_low_6
NF11113_low_6
[»] chr2 (12 HSPs)
chr2 (19-341)||(29455279-29455604)
chr2 (98-304)||(43564151-43564357)
chr2 (185-254)||(7574085-7574154)
chr2 (184-254)||(41646702-41646772)
chr2 (185-254)||(16668680-16668749)
chr2 (297-346)||(41646561-41646610)
chr2 (297-346)||(7573945-7573994)
chr2 (297-346)||(16668540-16668589)
chr2 (264-304)||(7574004-7574044)
chr2 (264-304)||(16668599-16668639)
chr2 (308-346)||(43564378-43564416)
chr2 (264-304)||(41646620-41646660)
[»] chr8 (10 HSPs)
chr8 (106-304)||(918899-919108)
chr8 (185-254)||(10186433-10186502)
chr8 (185-254)||(8150485-8150554)
chr8 (184-254)||(20172036-20172106)
chr8 (185-247)||(4138403-4138465)
chr8 (208-254)||(11428136-11428182)
chr8 (297-346)||(4138553-4138602)
chr8 (302-346)||(10186595-10186639)
chr8 (264-304)||(11428059-11428099)
chr8 (264-304)||(20172141-20172181)
[»] chr7 (13 HSPs)
chr7 (185-254)||(25419569-25419638)
chr7 (185-254)||(39066864-39066933)
chr7 (185-254)||(5768058-5768127)
chr7 (185-254)||(47233816-47233885)
chr7 (184-254)||(44393746-44393816)
chr7 (297-346)||(47233676-47233725)
chr7 (297-346)||(5767918-5767967)
chr7 (297-346)||(25419429-25419478)
chr7 (264-304)||(5767977-5768017)
chr7 (264-304)||(25419488-25419528)
chr7 (265-304)||(47233735-47233774)
chr7 (297-334)||(47932873-47932910)
chr7 (264-304)||(44393851-44393891)
[»] chr6 (5 HSPs)
chr6 (185-254)||(13433447-13433516)
chr6 (202-254)||(16712103-16712155)
chr6 (297-346)||(13433307-13433356)
chr6 (264-304)||(13433366-13433406)
chr6 (264-303)||(16712028-16712067)
[»] chr4 (23 HSPs)
chr4 (185-254)||(2504995-2505064)
chr4 (185-254)||(46092382-46092451)
chr4 (185-254)||(46134907-46134976)
chr4 (185-254)||(53830499-53830568)
chr4 (185-254)||(34737793-34737862)
chr4 (185-248)||(21802975-21803038)
chr4 (185-254)||(20036362-20036431)
chr4 (185-254)||(2500638-2500707)
chr4 (185-254)||(21632763-21632832)
chr4 (184-254)||(5430788-5430861)
chr4 (297-347)||(34737655-34737705)
chr4 (297-339)||(53830366-53830408)
chr4 (297-346)||(2504855-2504904)
chr4 (297-346)||(46092542-46092591)
chr4 (264-304)||(2504914-2504954)
chr4 (264-304)||(34737715-34737755)
chr4 (264-304)||(46092492-46092532)
chr4 (264-304)||(46135017-46135057)
chr4 (264-304)||(53830418-53830458)
chr4 (301-341)||(21632631-21632671)
chr4 (301-341)||(21803135-21803175)
chr4 (264-304)||(2500560-2500600)
chr4 (297-341)||(20036483-20036527)
[»] chr3 (12 HSPs)
chr3 (185-254)||(48266343-48266412)
chr3 (185-254)||(35870422-35870491)
chr3 (185-254)||(52349805-52349874)
chr3 (186-241)||(26215365-26215420)
chr3 (297-341)||(35870582-35870626)
chr3 (297-346)||(52349965-52350014)
chr3 (301-341)||(48266507-48266547)
chr3 (264-304)||(52349915-52349955)
chr3 (264-304)||(35870532-35870572)
chr3 (264-304)||(48266453-48266493)
chr3 (297-334)||(54945675-54945712)
chr3 (264-304)||(26215499-26215539)
[»] chr1 (10 HSPs)
chr1 (185-254)||(13786308-13786377)
chr1 (185-254)||(25807766-25807835)
chr1 (185-254)||(22912522-22912590)
chr1 (185-254)||(23726019-23726087)
chr1 (301-346)||(22912385-22912430)
chr1 (297-346)||(13786468-13786517)
chr1 (297-346)||(25807625-25807674)
chr1 (264-304)||(13786418-13786458)
chr1 (264-304)||(22912444-22912484)
chr1 (264-304)||(25807684-25807724)
[»] chr5 (8 HSPs)
chr5 (185-254)||(21605061-21605130)
chr5 (185-254)||(36991122-36991191)
chr5 (185-250)||(37301986-37302051)
chr5 (297-346)||(37301761-37301810)
chr5 (297-346)||(36991282-36991331)
chr5 (264-304)||(36991232-36991272)
chr5 (297-346)||(21604923-21604972)
chr5 (271-304)||(37301820-37301853)
[»] scaffold0516 (2 HSPs)
scaffold0516 (185-254)||(3326-3395)
scaffold0516 (297-346)||(3467-3516)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 29455279 - 29455604
Alignment:
Q  19 ctcctaatattgtcaattacacatatatacaaatacaag----cggctgacatttgtaactcccatttacaacccnnnnnnnntcatttccttaattttt 114  Q
    ||||||||||||||| ||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  29455279 ctcctaatattgtcagttacacatatatacaaatacatgtatgcggctgacatttgtaactcccatttacaacccaaaaaaaatcatttccttaattttt 29455378  T
Q  115 gattaataattgacaacacttattatatgcggctggccaattgtatttgtaactcccttttaccaagattattataatccattttattaatattgagggg 214  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29455379 gattaataattgataacacttattatatgcggctggccaattgtatt-gtaactcccttttaccaagattattataatccattttattaatatcgagggg 29455477  T
Q  215 ttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgtttatgttatccttttcattttctgatagtt 314  Q
    |||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  29455478 ttacattttaaaattattcatattcttaattaatcctcttcatttttttctaagcttatatatatgttgcttatgttatcctttttattttttgatagtt 29455577  T
Q  315 ttgattttctcttcaagctttgtgtgt 341  Q
    |||||||||||||||||||||||||||    
T  29455578 ttgattttctcttcaagctttgtgtgt 29455604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 98 - 304
Target Start/End: Original strand, 43564151 - 43564357
Alignment:
Q  98 tcatttccttaatttttgattaataattgacaacacttattatatgcggctggccaattgtatttgtaactcccttttaccaagattattataatccatt 197  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  43564151 tcattaccttaatttttgattaataattgacaacacttattatatgcggctggccaattgcatctgtaactcccttttaccaagattattataatccatt 43564250  T
Q  198 ttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgtttatgttatcctt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||| |||||||||||||    
T  43564251 ttattaatattgaggggttacattttaaaattattcatattcttaatcaatccttttcatttttttctaagcttatatatatgttgcttatgttatcctt 43564350  T
Q  298 ttcattt 304  Q
    |||||||    
T  43564351 ttcattt 43564357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 7574154 - 7574085
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7574154 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 7574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 41646772 - 41646702
Alignment:
Q  184 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41646772 tattttaatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 41646702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 16668749 - 16668680
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16668749 attataatccattttattaatattgaggggttacattttaaaattattcatattcttgatcaatcctctt 16668680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 41646610 - 41646561
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  41646610 tttcattttttgatagttttgattttctcttcaagctttgtgtgtgtgtg 41646561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 7573994 - 7573945
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  7573994 tttcattttttgatagttttgattttctcttcaagctttatgtgtgtgtg 7573945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 16668589 - 16668540
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  16668589 tttcattttttgatagttttgattttctcttcaagctttatgtgtgtgtg 16668540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 7574044 - 7574004
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  7574044 ctaagcttatatatatgttgcttatgttatccttttcattt 7574004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 16668639 - 16668599
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  16668639 ctaagcttatatatatgttgcttatgttatccttttcattt 16668599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 43564378 - 43564416
Alignment:
Q  308 gatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  43564378 gatagttttgattttctcttcaagctttgtgtgtgtgtg 43564416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 41646660 - 41646620
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  41646660 ctaagcttatatatatgttgcttatgttgtccttttcattt 41646620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 304
Target Start/End: Complemental strand, 919108 - 918899
Alignment:
Q  106 ttaatttttgattaataattgacaacacttattatatgcggctggccaattgtatttgtaactcccttttaccaagat-----------tattataatcc 194  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||| ||           |||||||||||    
T  919108 ttaatttttgattgataattgacaacacttattacatggggctggccaattgtatatgtaactcccgtttaccaatatccttttatcaatattataatcc 919009  T
Q  195 attttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgtttatgttatc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||  |||||||||    
T  919008 attttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttcatttttttctaagcttatatatatattgcatatgttatc 918909  T
Q  295 cttttcattt 304  Q
    ||||||||||    
T  918908 cttttcattt 918899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 10186433 - 10186502
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10186433 attataatccattttattaatattgaggggttacattttaaaattgttcatattcttaatcaatcctctt 10186502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 8150554 - 8150485
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8150554 attataatcaattttattaatattgaggggttacattttaaaattattcatattcttaatcagtcctctt 8150485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 20172036 - 20172106
Alignment:
Q  184 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  20172036 tattataatccattttattaatagtgaggggtttcattttaaaattattcatattcttagtcaatcatctt 20172106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 4138403 - 4138465
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaa 247  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  4138403 attataatctattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaa 4138465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 11428182 - 11428136
Alignment:
Q  208 tgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  11428182 tgaggggttacattttaaaattattcatattcttagtcaatcatctt 11428136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 4138553 - 4138602
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||| ||||    
T  4138553 tttcattttttgatagttttgcttttctcttcaagccttgtgtgtgtgtg 4138602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 10186595 - 10186639
Alignment:
Q  302 ttttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  10186595 ttttttgatagttttgcttttctcttcaagctttgtgtgtgtgtg 10186639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 11428099 - 11428059
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    ||||||| |||||||||||| ||||||||||||| ||||||    
T  11428099 ctaagctcatatatatgttgcttatgttatccttctcattt 11428059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 20172141 - 20172181
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    ||||||| |||||||||||| ||||||||||||| ||||||    
T  20172141 ctaagctcatatatatgttgcttatgttatccttctcattt 20172181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 25419638 - 25419569
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25419638 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 25419569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 39066933 - 39066864
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39066933 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 39066864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 5768127 - 5768058
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768127 attataatcaattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 5768058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 47233885 - 47233816
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47233885 attataatccattttattaatattaaggggttacattttaaaattattcatattcttaatcaatcctctt 47233816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 44393746 - 44393816
Alignment:
Q  184 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  44393746 tattataatccattttattaatagtgaggggtttcattttaaaattattcatattcttagtcaatcatctt 44393816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 47233725 - 47233676
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  47233725 tttcattttttgatagttttgattttctcttcaagctttgtgtgtgtgtg 47233676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 5767967 - 5767918
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  5767967 tttcattttttgatagttttgattttctctttaagctttgtgtgtgtgtg 5767918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 25419478 - 25419429
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  25419478 tttcattttttgatagttttgattttctcttcaagctttatgtgtgtgtg 25419429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 5768017 - 5767977
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  5768017 ctaagcttatatatatgttgcttatgttatccttttcattt 5767977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 25419528 - 25419488
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  25419528 ctaagcttatatatatgttgcttatgttatccttttcattt 25419488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 47233774 - 47233735
Alignment:
Q  265 taagcttatatatatgttgtttatgttatccttttcattt 304  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  47233774 taagcttatatatatgttgcttatattatccttttcattt 47233735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 47932910 - 47932873
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctt 334  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  47932910 tttcattttttgatagttttgattttctattcaagctt 47932873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 44393851 - 44393891
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    ||||||| |||||||||||| ||||||||||||| ||||||    
T  44393851 ctaagctcatatatatgttgcttatgttatccttctcattt 44393891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 13433516 - 13433447
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13433516 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 13433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 16712155 - 16712103
Alignment:
Q  202 taatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattcttaatcaatcatctt 16712103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 13433356 - 13433307
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  13433356 tttcattttttgatagttttgattttctcttcaagctttatgtgtgtgtg 13433307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 13433406 - 13433366
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  13433406 ctaagcttatatatatgttgcttatgttatccttttcattt 13433366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 16712067 - 16712028
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcatt 303  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  16712067 ctaagctcatatatatgttgcttatgttatccttttcatt 16712028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 2505064 - 2504995
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2505064 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 2504995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 46092382 - 46092451
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46092382 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 46092451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 46134907 - 46134976
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46134907 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 46134976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 53830568 - 53830499
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53830568 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 53830499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 34737862 - 34737793
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  34737862 attataatccattttattaacaatgaggggttacattttaaaattattcatattcttgatcaatcctctt 34737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 21802975 - 21803038
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaat 248  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  21802975 attataatccattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaat 21803038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 20036362 - 20036431
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  20036362 attataattcattttattaatattgagcagttacattttaaaattaatcatattcttaatcaatcctctt 20036431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 2500707 - 2500638
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||| ||||||||||||    
T  2500707 attataatccattttattaatattgtgcggttacattttaaaattatttgtattcttgatcaatcctctt 2500638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 21632832 - 21632763
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||| |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||    
T  21632832 attatgatccattttattaatattgaggggttatgttttaaaattgttcatattcttaatcaatcttctt 21632763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 5430788 - 5430861
Alignment:
Q  184 tattataatccattttattaatatt---gaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||| |||||| ||||    
T  5430788 tattataatccattttattaataatagtgaggggttacattttaaaattattcatattcttagtcaatcatctt 5430861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 34737705 - 34737655
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtgc 347  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  34737705 tttcattttttgatagttttgattttctcttcaagctttgtgtgtgtgtgc 34737655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 53830408 - 53830366
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgt 339  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  53830408 tttcattttttgatagttttgattttctcttcaagctttgtgt 53830366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 2504904 - 2504855
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  2504904 tttcattttttgatagttttgattttctcttcaagctttatgtgtgtgtg 2504855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 46092542 - 46092591
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  46092542 tttcattttttgatagttttgattttctctttaagctttgtgtgtgtgtg 46092591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 2504954 - 2504914
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  2504954 ctaagcttatatatatgttgcttatgttatccttttcattt 2504914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 34737755 - 34737715
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  34737755 ctaagcttatatatatgttgcttatgttatccttttcattt 34737715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 46092492 - 46092532
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  46092492 ctaagcttatatatatgttgcttatgttatccttttcattt 46092532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 46135017 - 46135057
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  46135017 ctaagcttatatatatgttgcttatgttatccttttcattt 46135057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 53830458 - 53830418
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  53830458 ctaagcttatatatatgttgcttatgttatccttttcattt 53830418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 21632671 - 21632631
Alignment:
Q  301 attttctgatagttttgattttctcttcaagctttgtgtgt 341  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  21632671 attttttgatagttttgcttttctcttcaagctttgtgtgt 21632631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 21803135 - 21803175
Alignment:
Q  301 attttctgatagttttgattttctcttcaagctttgtgtgt 341  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  21803135 attttttgatagttttgcttttctcttcaagctttgtgtgt 21803175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 2500600 - 2500560
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    ||||||||| |||||||||| |||| |||||||||||||||    
T  2500600 ctaagcttacatatatgttgcttatattatccttttcattt 2500560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 20036483 - 20036527
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgt 341  Q
    ||||||||| |||||||||| |||||||||||||| || ||||||    
T  20036483 tttcattttttgatagttttaattttctcttcaagtttcgtgtgt 20036527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 48266343 - 48266412
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48266343 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 48266412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 35870422 - 35870491
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35870422 attataatccattttattaatattgagaggttacattttaaaattattcatattcttaatcaatcctctt 35870491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 52349805 - 52349874
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52349805 attataatccattttattaatattgaggggttacattttaaaattatttatattcttaatcaatcctctt 52349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 26215365 - 26215420
Alignment:
Q  186 ttataatccattttattaatattgaggggttacattttaaaattattcatattctt 241  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  26215365 ttataatccattttattaatagcgaggggttacattttaaaattattcatattctt 26215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 35870582 - 35870626
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgt 341  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  35870582 tttcattttttgatagttttgattttctcttcaagctttgtgtgt 35870626  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 52349965 - 52350014
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  52349965 tttcattttttgatagttttgattttctcttcaagctttatgtgtgtgtg 52350014  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 48266507 - 48266547
Alignment:
Q  301 attttctgatagttttgattttctcttcaagctttgtgtgt 341  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  48266507 attttttgatagttttgattttctcttcaagctttgtgtgt 48266547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 52349915 - 52349955
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  52349915 ctaagcttatatatatgttgcttatgttatccttttcattt 52349955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 35870532 - 35870572
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  35870532 ctaaacttatatatatgttgcttatgttatccttttcattt 35870572  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 48266453 - 48266493
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  48266453 ctaagcttatatatatgttgcttatgttatcctcttcattt 48266493  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 54945712 - 54945675
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctt 334  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  54945712 tttcattttttgatagttttgattttctattcaagctt 54945675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 26215499 - 26215539
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    ||||||| |||||||||||| ||||||||||||| ||||||    
T  26215499 ctaagctcatatatatgttgcttatgttatccttctcattt 26215539  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 13786308 - 13786377
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13786308 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 13786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 25807835 - 25807766
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25807835 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 25807766  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 22912590 - 22912522
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  22912590 attataaaccattttattaatat-gaggagttacattttaaaattattcatattcttaatcaatcctctt 22912522  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 23726087 - 23726019
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    |||||||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||||||||||    
T  23726087 attataatccattttattaatattaaacggttacattttaaa-ttattcatattcttaatcaatcctctt 23726019  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 22912430 - 22912385
Alignment:
Q  301 attttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  22912430 attttttgatagttttgattttctcttcaagctttgtgtgtctgtg 22912385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 13786468 - 13786517
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  13786468 tttcattttttgatagttttgattttctcttcaagctttatgtgtgtgtg 13786517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 25807674 - 25807625
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  25807674 tttcattttttgatagttttgattttctcttcaagctttatgtgtgtgtg 25807625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 13786418 - 13786458
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  13786418 ctaagcttatatatatgttgcttatgttatccttttcattt 13786458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 22912484 - 22912444
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  22912484 ctaagcttatatatatgttgcttatgttattcttttcattt 22912444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 25807724 - 25807684
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  25807724 ctaagcttatatatatgtttcttatgttatccttttcattt 25807684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 21605130 - 21605061
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21605130 attataatccattttattaatattgaggggttaaattttaaaattattcatattcttaatcaatcctctt 21605061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 36991122 - 36991191
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36991122 attataatctattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 36991191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 37302051 - 37301986
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcc 250  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  37302051 attataatccattttattaataatggagggttacattttaaaattattcatattcttaatcaatcc 37301986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 37301810 - 37301761
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  37301810 tttcattttttgatagttttgattttctcttcaagctttgtgtgtgtgtg 37301761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 36991282 - 36991331
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  36991282 tttcattttttgatagttttgattttctctttaagctttgtgtgtgtgtg 36991331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 36991232 - 36991272
Alignment:
Q  264 ctaagcttatatatatgttgtttatgttatccttttcattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  36991232 ctaagcttatatatatgttgcttatgttatccttttcattt 36991272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 21604972 - 21604923
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| |||||||||||||||||| || ||||||||| ||| ||||    
T  21604972 tttcattttttgatagttttgattttctttttaagctttgtttgtgtgtg 21604923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 37301853 - 37301820
Alignment:
Q  271 tatatatatgttgtttatgttatccttttcattt 304  Q
    ||||||||||||| ||||||||||||||||||||    
T  37301853 tatatatatgttgcttatgttatccttttcattt 37301820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 3326 - 3395
Alignment:
Q  185 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 254  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  3326 attataatccattttattaatattaagcggttacattttaaaattattcatattcttaatcaatcctctt 3395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 3467 - 3516
Alignment:
Q  297 tttcattttctgatagttttgattttctcttcaagctttgtgtgtctgtg 346  Q
    ||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||    
T  3467 tttcattttttgataattttgtttttctcttcaggctttgtgtgtgtgtg 3516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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