View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11113_low_8 (Length: 320)

Name: NF11113_low_8
Description: NF11113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11113_low_8
NF11113_low_8
[»] chr5 (6 HSPs)
chr5 (1-318)||(29021624-29021941)
chr5 (111-318)||(28695545-28695752)
chr5 (3-135)||(28661108-28661240)
chr5 (162-317)||(28673346-28673501)
chr5 (253-317)||(28662717-28662781)
chr5 (189-245)||(28662057-28662113)
[»] chr4 (11 HSPs)
chr4 (171-216)||(2373556-2373601)
chr4 (171-228)||(12124509-12124566)
chr4 (116-307)||(8186386-8186577)
chr4 (171-213)||(2367990-2368032)
chr4 (171-213)||(5106641-5106683)
chr4 (81-143)||(21833269-21833331)
chr4 (174-215)||(2391349-2391390)
chr4 (81-143)||(553761-553823)
chr4 (171-213)||(2363162-2363204)
chr4 (171-213)||(2518912-2518954)
chr4 (186-230)||(6007324-6007368)
[»] chr8 (5 HSPs)
chr8 (165-225)||(18314714-18314774)
chr8 (78-213)||(18318632-18318767)
chr8 (90-213)||(14004075-14004198)
chr8 (180-216)||(32151897-32151933)
chr8 (111-143)||(32151970-32152002)
[»] chr1 (1 HSPs)
chr1 (81-143)||(19467423-19467485)
[»] scaffold1155 (1 HSPs)
scaffold1155 (24-101)||(1821-1898)
[»] scaffold0345 (1 HSPs)
scaffold0345 (24-101)||(8318-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (24-101)||(30584-30661)
[»] chr6 (1 HSPs)
chr6 (119-205)||(6432773-6432859)
[»] chr7 (1 HSPs)
chr7 (81-214)||(10615644-10615777)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 29021941 - 29021624
Alignment:
Q  1 tgacctcgactcgcttctctttcaaatctctcgcttccctttgaacctcacatctctcaatttctccgaccaagatatctttcccgcagatggtttgcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29021941 tgacctcgactcgcttctctttcaaatctctcgcttccctttgaacctcacatctctcaatttctccgaccaagatatctttcccgcagatggtttgcga 29021842  T
Q  101 gctttcagtaaaaacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctt 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  29021841 gctttcagcaaaaacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctttcttattgctgattgcttccctt 29021742  T
Q  201 tgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccg 300  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29021741 tgctcgaagaactcgatcttagttatcctgtaaagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccg 29021642  T
Q  301 caaggttcttctctctcg 318  Q
    |||||||  |||||||||    
T  29021641 caaggttgatctctctcg 29021624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 111 - 318
Target Start/End: Original strand, 28695545 - 28695752
Alignment:
Q  111 aaaacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctcgaaga 210  Q
    |||||||||| ||| |||||||||||||||||| |||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  28695545 aaaacattacaactatgacctctctcacttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgcccgaaga 28695644  T
Q  211 acttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttctt 310  Q
    ||| ||| ||||| ||||   |||| ||| ||| | ||||| ||||| ||||||| ||||||||||||||||| ||||||| |||||| ||||||||  |    
T  28695645 actcgatattagtgatcccagagagttcatctaccacagtagcttacacgatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaat 28695744  T
Q  311 ctctctcg 318  Q
    ||||||||    
T  28695745 ctctctcg 28695752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 28661108 - 28661240
Alignment:
Q  3 acctcgactcgcttctctttcaaatctctcgcttccctttgaacctcacatctctcaatttctccgaccaagatatctttcccgcagatggtttgcgagc 102  Q
    |||| ||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||| | || || |||||||||||||| |||||||| ||||    
T  28661108 accttgactcacttctatttcaaatctctagcttcccgttgaacctcacatctctcaatttctgcaacaaaaatatctttcccgcacatggtttgggagc 28661207  T
Q  103 tttcagtaaaaacattactactttgacctctct 135  Q
    ||||||  |||||||||| ||||||||||||||    
T  28661208 tttcagccaaaacattacaactttgacctctct 28661240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 162 - 317
Target Start/End: Original strand, 28673346 - 28673501
Alignment:
Q  162 atagcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcga 261  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||| ||| ||| | |||||  |||| |||    
T  28673346 atagcaccgatctcttcttcattgctgattgcttccctttgctcgaagaactcgatcttagtgatcccggagagttcatctaccacagtagtttacacga 28673445  T
Q  262 tggtttagaggctatttcattgtcactttttaaactccgcaaggttcttctctctc 317  Q
    |||| | ||||||||||||||| ||||||| |||||| ||||||||  ||||||||    
T  28673446 tggtgttgaggctatttcattgccacttttcaaactctgcaaggttaatctctctc 28673501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 28662717 - 28662781
Alignment:
Q  253 cttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttcttctctctc 317  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| | ||||||  ||||||||    
T  28662717 cttactcgatggtttagatgctatttcattgtcacttttcaaactctggaaggttaatctctctc 28662781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 28662057 - 28662113
Alignment:
Q  189 attgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatc 245  Q
    ||||||||||||||||||||||||| ||||||||| |||| | |||| |||||||||    
T  28662057 attgcttccctttgctcgaagaactcgatcttagtgatcccgaagagttcaactatc 28662113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 2373556 - 2373601
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaacttga 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  2373556 atctcttcttcattgctgattgtttccctttgctcgaagaacttga 2373601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 12124566 - 12124509
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcc 228  Q
    |||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||    
T  12124566 atctcttcttcattgctgattgtttccctttactagaagaacttgacctcagttatcc 12124509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 307
Target Start/End: Original strand, 8186386 - 8186577
Alignment:
Q  116 attactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttg 215  Q
    ||||| ||||||||||| ||||| |||| | || ||||| |  ||||||||||| |  ||||| |||| || ||||| || ||||| || |||||||| |    
T  8186386 attacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcg 8186485  T
Q  216 atcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggtt 307  Q
    |||| ||| | |||  |||| ||||| ||| ||||| |||  | |||||  | |||||| |||||||| ||||||| ||||| |||||||||    
T  8186486 atctcagtaaccctaaagagttcaacaatctcagtatcttctttgatggagttgaggctctttcattggcacttttcaaacttcgcaaggtt 8186577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 2367990 - 2368032
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaact 213  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  2367990 atctcttcttcattgctgattgtttccctttactcgaagaact 2368032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 5106641 - 5106683
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaact 213  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  5106641 atctcttcttcattgctgattgtttccctttactcgaagaact 5106683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 21833269 - 21833331
Alignment:
Q  81 ttcccgcagatggtttgcgagctttcagtaaaaacattactactttgacctctctcacttgtt 143  Q
    ||||||||||||| ||||||| |||     |||||||||||||||||||||||||||||||||    
T  21833269 ttcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgtt 21833331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 2391349 - 2391390
Alignment:
Q  174 tcttcttcattgctgattgcttccctttgctcgaagaacttg 215  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  2391349 tcttcttcattgttgattgcttccctttactcgaagaacttg 2391390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 553823 - 553761
Alignment:
Q  81 ttcccgcagatggtttgcgagctttcagtaaaaacattactactttgacctctctcacttgtt 143  Q
    |||||||| |||| ||||||||||||    |||||||||| ||||||||||||||||| ||||    
T  553823 ttcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgtt 553761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 2363162 - 2363204
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaact 213  Q
    |||||||||||||||||||||| |||||||| ||||| |||||    
T  2363162 atctcttcttcattgctgattgtttccctttcctcgacgaact 2363204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 2518954 - 2518912
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaact 213  Q
    |||||||||||||||||||||| |||||||| ||| |||||||    
T  2518954 atctcttcttcattgctgattgtttccctttactcaaagaact 2518912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 6007368 - 6007324
Alignment:
Q  186 ctgattgcttccctttgctcgaagaacttgatcttagttatcctg 230  Q
    ||||||| || ||||| ||||||||||||||||||||||| ||||    
T  6007368 ctgattgttttcctttactcgaagaacttgatcttagttaccctg 6007324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 18314714 - 18314774
Alignment:
Q  165 gcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagtta 225  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||||| || ||||||||    
T  18314714 gcactgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagtta 18314774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 18318632 - 18318767
Alignment:
Q  78 tctttcccgcagatggtttgcgagctttcagtaaaaacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctt 177  Q
    |||||||||| |||||  |||||| |||| | ||||| ||||| ||||||||||| ||||| ||||    |||| ||   |||||||||||| |||||||    
T  18318632 tctttcccgcggatgggctgcgagttttctgcaaaaatattacaactttgacctcactcacatgttctggccttcaatgtctcaatagcacttatctctt 18318731  T
Q  178 cttcattgctgattgcttccctttgctcgaagaact 213  Q
    | ||||||| ||||| |||||||| || ||||||||    
T  18318732 cctcattgcagattgtttccctttccttgaagaact 18318767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 14004198 - 14004075
Alignment:
Q  90 atggtttgcgagctttcagtaaaaacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctga 189  Q
    |||||||||||||||||  | | |||||||| ||||||||||| || | ||||| | ||||| |  | || ||||||||| |||||    ||||||||||    
T  14004198 atggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctga 14004099  T
Q  190 ttgcttccctttgctcgaagaact 213  Q
    ||| || |||||||| ||||||||    
T  14004098 ttgttttcctttgctagaagaact 14004075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 32151933 - 32151897
Alignment:
Q  180 tcattgctgattgcttccctttgctcgaagaacttga 216  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  32151933 tcattgccgattgtttccctttgctcgaagaacttga 32151897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 32152002 - 32151970
Alignment:
Q  111 aaaacattactactttgacctctctcacttgtt 143  Q
    |||||||||| ||||||||||||||||||||||    
T  32152002 aaaacattacaactttgacctctctcacttgtt 32151970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 19467423 - 19467485
Alignment:
Q  81 ttcccgcagatggtttgcgagctttcagtaaaaacattactactttgacctctctcacttgtt 143  Q
    |||||||| |||| ||||||| ||||| | |||| ||||| ||||||||||||||||||||||    
T  19467423 ttcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 1821 - 1898
Alignment:
Q  24 aaatctctcgcttccctttgaacctcacatctctcaatttctccgaccaagatatctttcccgcagatggtttgcgag 101  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||| |||||   ||  ||||||||||||| |||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag 1898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 8395 - 8318
Alignment:
Q  24 aaatctctcgcttccctttgaacctcacatctctcaatttctccgaccaagatatctttcccgcagatggtttgcgag 101  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||| |||||   ||  ||||||||||||| |||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag 8318  T

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Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 30584 - 30661
Alignment:
Q  24 aaatctctcgcttccctttgaacctcacatctctcaatttctccgaccaagatatctttcccgcagatggtttgcgag 101  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||| |||||   ||  ||||||||||||| |||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag 30661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 6432859 - 6432773
Alignment:
Q  119 actactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctc 205  Q
    ||||||||||||||||||| ||||| |||| || |  | || |||||| |||| |||||  ||||||| ||||| ||||||||||||    
T  6432859 actactttgacctctctcaattgttcccacattcattctcttaatagctctcacctcttactcattgccgattgtttccctttgctc 6432773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 10615777 - 10615644
Alignment:
Q  81 ttcccgcagatggtttgcgagctttcagtaaaaacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttctt 180  Q
    |||||||| |||| || |||||||||    |||| ||||| |||||||||||||||||||||| |||| | |  | | ||||||| | | |||| ||| |    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacatcgctaacttcaatagtagtgatctgttcct 10615678  T
Q  181 cattgctgattgcttccctttgctcgaagaactt 214  Q
     ||||| || || |||||||| ||||||||||||    
T  10615677 tattgcagaatgtttccctttactcgaagaactt 10615644  T

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