View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11114_high_1 (Length: 586)
Name: NF11114_high_1
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 8 - 571
Target Start/End: Original strand, 30315295 - 30315858
Alignment:
| Q |
8 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315295 |
gagcagagagaatatgaagaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
30315394 |
T |
|
| Q |
108 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
207 |
Q |
| |
|
| ||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315395 |
ccgcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
30315494 |
T |
|
| Q |
208 |
atactatattctcactcagtctctttccttctgtatggcctaattacaacagttttctaccaaaattaaattgaattgaatgtagcctatattagttann |
307 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30315495 |
atactatattctcactcggtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaattaaattgaatgtagcctatattagttatt |
30315594 |
T |
|
| Q |
308 |
nnnnnnnnnnaatgacatgttaacattatttaaaatatttggttcttcttaattgaaggtgaggaagacaatgtgataagccaaattcagagaccagtga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30315595 |
ttttatttttaatgacatgttaacattatttaaaatatttggttctacttaattgaaggtgaggaagacaatgtgataagccaaatagagagaccagtga |
30315694 |
T |
|
| Q |
408 |
aagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
507 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315695 |
aagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30315794 |
T |
|
| Q |
508 |
ggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatga |
571 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
30315795 |
ggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatga |
30315858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 30286714 - 30287064
Alignment:
| Q |
8 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30286714 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
30286813 |
T |
|
| Q |
108 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
30286814 |
cggcaggtcatccaattgtcgtaactgcttcttcggatctctctttgcttggatttggtatcaatgcggagaacaatcaaaggaacttccttgctgg--t |
30286911 |
T |
|
| Q |
208 |
atactatattctcactcagtctctttccttctgtatggcctaattacaacagttttctaccaaaattaaattgaattgaatgtagcctatattagttann |
307 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||| ||||| | |
|
|
| T |
30286912 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaatt |
30287007 |
T |
|
| Q |
308 |
nnnnnnnnnnaatgacatgttaacattatttaaaatatttggttcttcttaattgaa |
364 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| |||||||||| |
|
|
| T |
30287008 |
ttttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30287064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 360 - 570
Target Start/End: Original strand, 30292147 - 30292357
Alignment:
| Q |
360 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
459 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30292147 |
ttgaaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30292246 |
T |
|
| Q |
460 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcggga |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292247 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcggga |
30292346 |
T |
|
| Q |
560 |
actttttaatg |
570 |
Q |
| |
|
|| |||||||| |
|
|
| T |
30292347 |
acgttttaatg |
30292357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 360 - 571
Target Start/End: Original strand, 30304781 - 30304992
Alignment:
| Q |
360 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
459 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30304781 |
ttgaaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30304880 |
T |
|
| Q |
460 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcggga |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
30304881 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttggga |
30304980 |
T |
|
| Q |
560 |
actttttaatga |
571 |
Q |
| |
|
||||||||||| |
|
|
| T |
30304981 |
gctttttaatga |
30304992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 30291748 - 30292098
Alignment:
| Q |
8 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30291748 |
gagcagagagaatatgaggaagatgaacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattc |
30291847 |
T |
|
| Q |
108 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
207 |
Q |
| |
|
| |||||| |||||| ||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |
|
|
| T |
30291848 |
cagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg--t |
30291945 |
T |
|
| Q |
208 |
atactatattctcactcagtctctttccttctgtatggcctaattacaacagttttctaccaaaattaaattgaattgaatgtagcctatattagttann |
307 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||| ||||| | |
|
|
| T |
30291946 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaatt |
30292041 |
T |
|
| Q |
308 |
nnnnnnnnnnaatgacatgttaacattatttaaaatatttggttcttcttaattgaa |
364 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| |||||||||| |
|
|
| T |
30292042 |
ttttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30292098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 30304382 - 30304732
Alignment:
| Q |
8 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30304382 |
gagcagagagaatatgaggaagatgaacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattc |
30304481 |
T |
|
| Q |
108 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
207 |
Q |
| |
|
| |||||| |||||| ||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |
|
|
| T |
30304482 |
cagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg--t |
30304579 |
T |
|
| Q |
208 |
atactatattctcactcagtctctttccttctgtatggcctaattacaacagttttctaccaaaattaaattgaattgaatgtagcctatattagttann |
307 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||| ||||| | |
|
|
| T |
30304580 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaatt |
30304675 |
T |
|
| Q |
308 |
nnnnnnnnnnaatgacatgttaacattatttaaaatatttggttcttcttaattgaa |
364 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| |||||||||| |
|
|
| T |
30304676 |
ttttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
30304732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 360 - 571
Target Start/End: Original strand, 30287113 - 30287324
Alignment:
| Q |
360 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
459 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30287113 |
ttgaaggtgaggaggacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30287212 |
T |
|
| Q |
460 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcggga |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
30287213 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttggga |
30287312 |
T |
|
| Q |
560 |
actttttaatga |
571 |
Q |
| |
|
||||||||||| |
|
|
| T |
30287313 |
gctttttaatga |
30287324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 360 - 559
Target Start/End: Original strand, 30299989 - 30300188
Alignment:
| Q |
360 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30299989 |
ttgaaggtgaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30300088 |
T |
|
| Q |
460 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcggga |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||| |
|
|
| T |
30300089 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttggga |
30300188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 30299187 - 30299370
Alignment:
| Q |
26 |
gaagatgaacaacaacaagaa---agaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaa |
122 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30299187 |
gaagatgaacaacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaa |
30299286 |
T |
|
| Q |
123 |
ttgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggta |
206 |
Q |
| |
|
||| || | ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
30299287 |
ctgtcgttagcgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
30299370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 363 - 504
Target Start/End: Original strand, 46810441 - 46810582
Alignment:
| Q |
363 |
aaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatca |
462 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| |||| ||||| |||||| ||||||| || |
|
|
| T |
46810441 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaacca |
46810540 |
T |
|
| Q |
463 |
gagacaatcttactttgcaaatgctcagcctcaacaaaggga |
504 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46810541 |
aagacaatcttactttgcaaatgctcaacctcaacaaaggga |
46810582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 46810199 - 46810333
Alignment:
| Q |
74 |
gctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatg |
173 |
Q |
| |
|
|||||| |||||||||| || ||| | |||||||||||||||| ||| | | ||| |||||| || ||||| ||| ||||| ||||||||||||| |
|
|
| T |
46810199 |
gctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcgaatctcaatttccttggctttggtatcaatg |
46810298 |
T |
|
| Q |
174 |
ctgagaacaatcagaggaacttccttgctggtata |
208 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
46810299 |
ctgagaacaatcagagaaactttcttgcaggtata |
46810333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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