View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11114_high_10 (Length: 261)
Name: NF11114_high_10
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3845502 - 3845262
Alignment:
| Q |
1 |
attgatttcacaaatttctagagggaaaataaaacaggatcttggtccacctagagtaaaataagtcatactgcacatacttttcatcattttaaggaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3845502 |
attgatttcacaaatttctagagggaaaataaaacaggatcttggtccacctagagtaaaataagtcatactgcacatacttttcatcattttaaggaac |
3845403 |
T |
|
| Q |
101 |
ataatgaaacagtaaggagctggcttcatcattgatactatatatcactcaatttatattagtcttttttaataaagctttgtaattatcttaattggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3845402 |
ataatgaaacagtaaggagctggcttcatcattgatactatatatcactcaatttatattagtcttttttaataaagctttgtaattatcttaattggct |
3845303 |
T |
|
| Q |
201 |
ctctaaaatattgatattttgataatacatacacacacctc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3845302 |
ctctaaaatattgatattttgataatacatacacacacctc |
3845262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University