View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11114_high_4 (Length: 460)
Name: NF11114_high_4
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 113109 - 113546
Alignment:
| Q |
1 |
gaattagtgggtggatttggaattctaaagcagcacttaaggatggggtttactgcaaaagttagtgtggaaaaagtacaaagcagtaatatgccattac |
100 |
Q |
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| T |
113109 |
gaattagtgggtggatttggaattctaaagcagcacttaaggatggggtttactgcaaaagttagtgtagaaaaagtacaaagcagtaaaatgccatgac |
113208 |
T |
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| Q |
101 |
aagtagccattacacgtcccattttggaaggtgttcccaaagtaatcctttcaggttgtcgattaacatgatcttgaatattcaagaaataagaatttgt |
200 |
Q |
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| T |
113209 |
aagtagccattacaagtcccattttggaaggtgttcccaaagtaatcctttcaggttgtcaattaacatgatcttgaatattcaagaaataagaatttgt |
113308 |
T |
|
| Q |
201 |
tgttgagttggtcttgaaaacgtaaagaccaggtggtttaagaggtaggtaggctgagatagcagtggcccaagatttggagacgtaccttgcagagtta |
300 |
Q |
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| T |
113309 |
cgttgagttggtcttgaaaacgtaaagaccaggtggtttaagaggtaggtaggctgagatagcagtggcccaagatttggagacgtaccttgcagagtta |
113408 |
T |
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| Q |
301 |
agcagacacttaaaaggaagcaaagtaaggataggaagcatcaagtcttgagagagctctgagaacagaataaaactcttattactactatttgagcatt |
400 |
Q |
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| T |
113409 |
agaagacacttaaaaggaagcaaagtaaggataggaagcatcaagtcttgagagagctctgagaacagaataaaactcttattactactatttgagcatt |
113508 |
T |
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| Q |
401 |
ccctaatattcatatgcttcttgtttgttgcatgatga |
438 |
Q |
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| T |
113509 |
gcctaatattcatatgcttcttgtttgttgcatgatga |
113546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 362
Target Start/End: Complemental strand, 27360367 - 27360224
Alignment:
| Q |
219 |
aacgtaaagaccaggtggtttaagaggtaggtaggctgagatagcagtggcccaagatttggagacgtaccttgcagagttaagcagacacttaaaagga |
318 |
Q |
| |
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|||||| ||||| ||||||||||| | ||| ||| || |||||||| | |||| ||||||||||||||||||||||||||| | ||| |||| |||| |
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| T |
27360367 |
aacgtagagaccgggtggtttaagttgaaggcaggatggaatagcagtagaccaatgtttggagacgtaccttgcagagttaagtaaacagttaagagga |
27360268 |
T |
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| Q |
319 |
agcaaagtaaggataggaagcatcaagtcttgagagagctctga |
362 |
Q |
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| ||| |||||||| |||||||| |||||||||||||||||| |
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| T |
27360267 |
actaaacaaaggatagcaagcatcacgtcttgagagagctctga |
27360224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 362
Target Start/End: Complemental strand, 27369725 - 27369582
Alignment:
| Q |
219 |
aacgtaaagaccaggtggtttaagaggtaggtaggctgagatagcagtggcccaagatttggagacgtaccttgcagagttaagcagacacttaaaagga |
318 |
Q |
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|||||| ||||| ||||||||||| | ||| ||| || |||||||| | |||| ||||||||||||||||||||||||||| | ||| |||| |||| |
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| T |
27369725 |
aacgtagagaccgggtggtttaagttgaaggcaggatggaatagcagtagaccaatgtttggagacgtaccttgcagagttaagtaaacagttaagagga |
27369626 |
T |
|
| Q |
319 |
agcaaagtaaggataggaagcatcaagtcttgagagagctctga |
362 |
Q |
| |
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| ||| |||||||| |||||||| |||||||||||||||||| |
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| T |
27369625 |
actaaacaaaggatagcaagcatcacgtcttgagagagctctga |
27369582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 27360554 - 27360505
Alignment:
| Q |
17 |
ttggaattctaaagcagcacttaaggatggggtttactgcaaaagttagt |
66 |
Q |
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|||||||| |||||||| |||||||||| ||||||||||||||||||||| |
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| T |
27360554 |
ttggaattttaaagcaggacttaaggatagggtttactgcaaaagttagt |
27360505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 9902262 - 9902181
Alignment:
| Q |
268 |
gcccaagatttggagacgtaccttgcagagttaagcagacacttaaaaggaagcaaagtaaggataggaagcatcaagtctt |
349 |
Q |
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| T |
9902262 |
gcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtctt |
9902181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 4145196 - 4145122
Alignment:
| Q |
259 |
atagcagtggcccaagatttggagacgtaccttgcagagttaagcagacacttaaaaggaagcaaagtaaggata |
333 |
Q |
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| T |
4145196 |
atagtagtagcccaagatttgcaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggata |
4145122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 5054959 - 5055047
Alignment:
| Q |
268 |
gcccaagatttggagacgtaccttgcagagttaagcagacacttaaaaggaagcaaagtaaggataggaagcatcaagtcttgagagag |
356 |
Q |
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||||| |||||| | || ||||||| |||||||| ||| | |||| ||||| |||||||| |||| ||| ||||||||||| |||||| |
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| T |
5054959 |
gcccatgatttgcatacataccttgtagagttaaacagtgagttaataggaaccaaagtaaagatatgaaacatcaagtcttcagagag |
5055047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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