View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11114_high_5 (Length: 409)
Name: NF11114_high_5
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 30432372 - 30431990
Alignment:
| Q |
11 |
cacagacaatttgaattcactccttctaacaacactccccttttagatagattgccgcatgtcggtaaccttctaaggatgaattgccaagagaaaattt |
110 |
Q |
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| T |
30432372 |
cacacacaatttgaattcacttcttctaacaacactccccttttagatagattgccgcatgttggtaaccttctaaggatgagttgccaagagaaaattt |
30432273 |
T |
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| Q |
111 |
agaccttcaatggcacataactattccaaattttgttaaggcgccattgacacacacccaatatacgtgtaatgtgaaatttgttttgaatttacattgt |
210 |
Q |
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| T |
30432272 |
agaccttcaatggcacataactattctaaattttgttaaggtgccattgacacacacccaatatacgtgtaatgtgaaatttgttttaaatatacattgt |
30432173 |
T |
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| Q |
211 |
ctttaaattaaattctttttatttggcacatatacattgaaatggaattgttctattttaatatagtgttatacatatatgagactattttatccattga |
310 |
Q |
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| T |
30432172 |
ctttaaattaaattctttttatttggcacatttacattgaaatggaattgttctatttta--atagtgttatacatatatgagactattttatccattga |
30432075 |
T |
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| Q |
311 |
gaaattctaattgcatctctatttgtatcactaacgtttcacagcttagaatcatggacatttgaaataatggtgctcctttctg |
395 |
Q |
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| T |
30432074 |
gaaattctaactgcatctctatttgtatcactaacgttttacagcttagaatcatggacatttgaaataatggtgctcctttctg |
30431990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 270 - 395
Target Start/End: Complemental strand, 30415481 - 30415353
Alignment:
| Q |
270 |
aatatagtgttatacatatatgagactat----tttatccattgagaaattctaattgcatctctatttgtatcactaacgtttcacagcttagaatcat |
365 |
Q |
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| T |
30415481 |
aatataatgttatacaaatatgagactatgttatttatccactgagaatttctaattgcatctctatt-gtatcactaacattttacagcttagaatcat |
30415383 |
T |
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| Q |
366 |
ggacatttgaaataatggtgctcctttctg |
395 |
Q |
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|||||||| |||||||||||||||| |||| |
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| T |
30415382 |
ggacatttcaaataatggtgctcctgtctg |
30415353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 30380685 - 30380641
Alignment:
| Q |
351 |
acagcttagaatcatggacatttgaaataatggtgctcctttctg |
395 |
Q |
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| T |
30380685 |
acagtttagaatcatggacatttgaactaatggtgcttctttctg |
30380641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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