View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11114_high_6 (Length: 379)

Name: NF11114_high_6
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11114_high_6
NF11114_high_6
[»] chr8 (2 HSPs)
chr8 (88-223)||(37389041-37389176)
chr8 (253-364)||(37389206-37389318)
[»] chr3 (6 HSPs)
chr3 (253-351)||(55475458-55475556)
chr3 (253-351)||(92521-92619)
chr3 (253-351)||(41885776-41885874)
chr3 (126-197)||(41885633-41885704)
chr3 (126-199)||(92690-92763)
chr3 (137-197)||(55477792-55477852)
[»] chr2 (2 HSPs)
chr2 (253-336)||(27277015-27277098)
chr2 (126-199)||(27276871-27276944)
[»] chr7 (3 HSPs)
chr7 (253-351)||(20900784-20900882)
chr7 (126-197)||(20900643-20900714)
chr7 (172-222)||(48380094-48380144)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 37389041 - 37389176
Alignment:
Q  88 ttcaagacttcagccacataataccataaatatccaattcacctgccagcacctattactttaaccccattgccttcaactttctatcttcaacctccac 187  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37389041 ttcaagacttcaaccacataataccataaatatccaattcacctaccaccaccgattactttaaccccattgccttcaactttctatcttcaacctccac 37389140  T
Q  188 gaaactacaacatatttacatcttcatcgtgttgtt 223  Q
    ||||||||||||||||||||||||||||||||||||    
T  37389141 gaaactacaacatatttacatcttcatcgtgttgtt 37389176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 37389206 - 37389318
Alignment:
Q  253 ttaaagaacaatttaaaaataatttacatgtgttgcaattaaaa-aaccatggtgtttatggaacccacaattaaaaacaatattttggattcaatctaa 351  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37389206 ttaaagaacaatttaaaaataatttacatgtgttgcaattaaaaaaaccatggtgtttatggaacccacaattaaaaacaatattttggattcaatctaa 37389305  T
Q  352 agactcaacccat 364  Q
    |||||||||||||    
T  37389306 agactcaacccat 37389318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 55475556 - 55475458
Alignment:
Q  253 ttaaagaacaatttaaaaataatttacatgtgttgcaattaaaaaaccatggtgtttatggaacccacaattaaaaacaatattttggattcaatctaa 351  Q
    ||||||||||||| ||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  55475556 ttaaagaacaattcaaaaacaatctccatgtgttgcaattgaaaaaccatggtgtttatggaacccacaattaaaaacaatattctagcttcaatctaa 55475458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 92619 - 92521
Alignment:
Q  253 ttaaagaacaatttaaaaataatttacatgtgttgcaattaaaaaaccatggtgtttatggaacccacaattaaaaacaatattttggattcaatctaa 351  Q
    ||||||||||||| ||||| ||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||    
T  92619 ttaaagaacaattcaaaaacaatctccatgtgttgcaattgaaaaaccatggtgtttatggaactcacaattaaaaacaatattctagcttcaatctaa 92521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 41885776 - 41885874
Alignment:
Q  253 ttaaagaacaatttaaaaataatttacatgtgttgcaattaaaaaaccatggtgtttatggaacccacaattaaaaacaatattttggattcaatctaa 351  Q
    ||||||||||||| ||||| ||| | |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| | | ||||||||||    
T  41885776 ttaaagaacaattcaaaaacaatctccatgtgttgcaattgaaaaaccatggtatttatggaacccacaattaaaaacaatattctagcttcaatctaa 41885874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 41885633 - 41885704
Alignment:
Q  126 tcacctgccagcacctattactttaaccccattgccttcaactttctatcttcaacctccacgaaactacaa 197  Q
    |||||| ||| ||||||||||||||||| ||||  ||||||||| |||||||||||||||| ||||||||||    
T  41885633 tcacctaccaccacctattactttaacctcattctcttcaacttactatcttcaacctccatgaaactacaa 41885704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 92763 - 92690
Alignment:
Q  126 tcacctgccagcacctattactttaaccccattgccttcaactttctatcttcaacctccacgaaactacaaca 199  Q
    |||||| ||| ||||||||||||||||| ||||  |||||||||  ||||||||||||||| ||||||||||||    
T  92763 tcacctaccaccacctattactttaacctcattctcttcaacttaatatcttcaacctccatgaaactacaaca 92690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 55477852 - 55477792
Alignment:
Q  137 cacctattactttaaccccattgccttcaactttctatcttcaacctccacgaaactacaa 197  Q
    ||||||||||||||||| ||||  ||||||||| |||||||||||||||| ||||||||||    
T  55477852 cacctattactttaacctcattctcttcaacttactatcttcaacctccatgaaactacaa 55477792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 27277015 - 27277098
Alignment:
Q  253 ttaaagaacaatttaaaaataatttacatgtgttgcaattaaaaaaccatggtgtttatggaacccacaattaaaaacaatatt 336  Q
    ||||||||||||| ||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27277015 ttaaagaacaattcaaaaacaatctccatgtgttgcaattgaaaaaccatggtgtttatggaacccacaattaaaaacaatatt 27277098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 27276871 - 27276944
Alignment:
Q  126 tcacctgccagcacctattactttaaccccattgccttcaactttctatcttcaacctccacgaaactacaaca 199  Q
    |||||| ||| || |||||||||||||| ||||  |||||||||  ||||||||||||||| ||||||||||||    
T  27276871 tcacctaccaccaactattactttaacctcattttcttcaacttaatatcttcaacctccatgaaactacaaca 27276944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 20900784 - 20900882
Alignment:
Q  253 ttaaagaacaatttaaaaataatttacatgtgttgcaattaaaaaaccatggtgtttatggaacccacaattaaaaacaatattttggattcaatctaa 351  Q
    ||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| | | ||||||||||    
T  20900784 ttaaagaacaattcaaaaacaatctccatgtattgcaattgaaaaaccatggtgtttttggaacccacaattaaaaacaatattctagcttcaatctaa 20900882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 20900643 - 20900714
Alignment:
Q  126 tcacctgccagcacctattactttaaccccattgccttcaactttctatcttcaacctccacgaaactacaa 197  Q
    |||||| ||| ||||||||||||||||| ||||  ||||||||| ||||||||||||||||  |||||||||    
T  20900643 tcacctaccaccacctattactttaacctcattctcttcaacttactatcttcaacctccataaaactacaa 20900714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 48380144 - 48380094
Alignment:
Q  172 tatcttcaacctccacgaaactacaacatatttacatcttcatcgtgttgt 222  Q
    ||||||||||||||| |||||||||||| |||| |||||||||| ||||||    
T  48380144 tatcttcaacctccatgaaactacaacacatttccatcttcatcctgttgt 48380094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University