View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11114_low_2 (Length: 573)
Name: NF11114_low_2
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 557
Target Start/End: Original strand, 6058275 - 6058820
Alignment:
| Q |
12 |
agagacaagatgctcacaacttctaattgcaagtgttttcaatgaagggaggtgaagtggtaaatctcctcttaattttggacaattttctattgtgaga |
111 |
Q |
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| T |
6058275 |
agagacaagatgctcacaacttctaattgcaagtgttttcaatgaagggaggtgaactggtaaatctcctcttaattttggacaattttctattgtgaga |
6058374 |
T |
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| Q |
112 |
cgcttaagttgaggaaaagcacatgactcagatgaatgccacaccttccaacaaggcatgttttcaaattcaagaaattcaagcaaaggaaatggtgtta |
211 |
Q |
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| T |
6058375 |
cgcttaagttgaggaaaagcatatgactcagatgaatgccacaccttccaacaaggcatgttttcaaattcaagaaattcaagcaaaggaaatggtgtta |
6058474 |
T |
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| Q |
212 |
ccgaagaagaagaatctccgtttttgtagaaactatcatctatagtctctagcccattcaaatctgaaatagtgaggtacttgagagttgttagttgccc |
311 |
Q |
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| T |
6058475 |
cggaagaagaagaatctccgtttttgtagaaactaccatctatagtctctagcccattcaaatctgaaatagtgaggtacttgagagttgttagttgccc |
6058574 |
T |
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| Q |
312 |
aagtgaaggaagcaaacaacaattctcacaagaagagattgttagactagtcatattgtgatacgaagaattcccaatccaatctggaaatcttgtaccc |
411 |
Q |
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| T |
6058575 |
aagtgaaggaagcaaacaacaattctcacaagaagagattgttagactagtcatattgtgatacgaaggattcccaatccaatctggaaatcttgtaccc |
6058674 |
T |
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| Q |
412 |
ctatagccatttattgatagcaatttcaggtcttggtaaggttgtaatttgcaaagtatatcaatttctgtttgagaatctgtacaatcatcacttgaaa |
511 |
Q |
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| T |
6058675 |
ctatagccatttattgatagcaatttcaggtcttggtaaggttgtaatttgcaaagtatatcaatttctgtttgagaatctgtacaatcatcacttgaaa |
6058774 |
T |
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| Q |
512 |
accattccaagaataagttgttaatctgcttcttatccatcatttt |
557 |
Q |
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| T |
6058775 |
accattccaagaataagttgttaatctgcttcttatccatcatttt |
6058820 |
T |
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