View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11114_low_3 (Length: 523)
Name: NF11114_low_3
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 8066530 - 8066139
Alignment:
| Q |
1 |
tctaaggaggatctcacaatcttcgatactacattatgggatttcatgcaacaaaattcggcttacgcggagttattcaatgatgctatggagagtgact |
100 |
Q |
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| T |
8066530 |
tctaaggaggatctcacaatcttcgatactacattatgggatttcatgcaacaaaattcggcttacgcggagttattcaatgatgctatggagagtgact |
8066431 |
T |
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| Q |
101 |
ctaatatgatgaggtttgcaatgagtgattgcaaatcagtttttgagggctcaacttctttggttgatgttggaggtggaaccggaaacacggttaaaat |
200 |
Q |
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| T |
8066430 |
ctaatatgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttggaggtggaaccggaaacacggttaaaat |
8066331 |
T |
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| Q |
201 |
tatttctgaggcgtttcctacgttaaaatgtatagtgttcgaccttccaaacgtggtagaaggattaacgggaaataactatctgagttttgtcggcgga |
300 |
Q |
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| T |
8066330 |
tatttctgaggcgtttcctacgttaaaatgtatagtgttcgaccttccaaacgtggtagaaggattaacgggaaataactatctgagttttgtcggcgga |
8066231 |
T |
|
| Q |
301 |
aatatgttcgaatctatccctcaagctgatgcaattttactaaaggtaaaattctattattttttcttaactaattgcaaatctatatattg |
392 |
Q |
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| T |
8066230 |
aatatgttcgaatctatccctcaagctgatgcaattttactaaaggtaaaattctattattttttcttaactaattgcaaatctatatattg |
8066139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 8074960 - 8074618
Alignment:
| Q |
6 |
ggaggatctcacaatcttcgatactacattatgggatttcatgcaacaaaattcggcttacgcggagttattcaatgatgctatggagagtgactctaat |
105 |
Q |
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| T |
8074960 |
ggaggacctcacaatctttgagactccattatgggatttaattttacaaaatccgactcattccaagttattcaatgatgctatggaaagtgattctaat |
8074861 |
T |
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| Q |
106 |
atgatgaggtttgcaatgagtgattgcaaatcagtttttgagggctcaacttctttggttgatgttggaggtggaaccggaaacacggttaaaattattt |
205 |
Q |
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| T |
8074860 |
atggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttcgttggttgatgttggaggtggaaccggaaacactgttaaaattattt |
8074761 |
T |
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| Q |
206 |
ctgaggcgtttcctacgttaaaatgtatagtgttcgaccttccaaacgtggtagaaggattaacgggaaataactatctgagttttgtcggcggaaatat |
305 |
Q |
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| T |
8074760 |
gtgaggcgtttcctacgttaaaatgtatagtgttcgaccttccaaacgtggtagaaggattaacgggaaataactatctgagttttgtaggcggaaacat |
8074661 |
T |
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| Q |
306 |
gttcgaatctatccctcaagctgatgcaattttactaaaggta |
348 |
Q |
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| T |
8074660 |
gtttgaatctatccctcaagctgatgcaattttactcaaggta |
8074618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 435 - 492
Target Start/End: Complemental strand, 8066096 - 8066039
Alignment:
| Q |
435 |
tttgtattattgacgttaaaacctatagagaattgatatatgaacaaccgaatttcat |
492 |
Q |
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| T |
8066096 |
tttgtattattgacgttaaaacctatagagaactgatatatgaacaaccgaatttcat |
8066039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 34951375 - 34951317
Alignment:
| Q |
160 |
ttggttgatgttggaggtggaaccggaaacacggttaaaattatttctgaggcgtttcc |
218 |
Q |
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| T |
34951375 |
ttggttgatgttggtggtggaactggaaacacagctaagattatttgtgaggcgtttcc |
34951317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 34946904 - 34946846
Alignment:
| Q |
160 |
ttggttgatgttggaggtggaaccggaaacacggttaaaattatttctgaggcgtttcc |
218 |
Q |
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| T |
34946904 |
ttggttgatgttggtggtggaactggaaacacagctaagattatatgtgaggcgtttcc |
34946846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 34343743 - 34343787
Alignment:
| Q |
304 |
atgttcgaatctatccctcaagctgatgcaattttactaaaggta |
348 |
Q |
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| T |
34343743 |
atgttcaaatctatccctcaagctgatgcaattatgctaaaggta |
34343787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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