View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11114_low_7 (Length: 366)
Name: NF11114_low_7
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 47694702 - 47694347
Alignment:
| Q |
16 |
agcagagaaaagtaaagaggtaagaatctaataattccatattataacnnnnnnntaa-----tctgaattcacactcatgacaagaaaaacctgctctt |
110 |
Q |
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| T |
47694702 |
agcagagaaaagtaaagaggtaagaatctaataattccatattataacagaagaaaaaaaaaatctgaattcacactcatgacaagaaaaacctgctctt |
47694603 |
T |
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| Q |
111 |
tttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgactggttaaggta |
210 |
Q |
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| T |
47694602 |
tttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgactggttaaggta |
47694503 |
T |
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| Q |
211 |
gtgatatgttttaggatgtcctaatttgtatttctcgatttcctgtcaacataaattgtaatgagtttatataattaaaagaataaatagaaagtaagct |
310 |
Q |
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| T |
47694502 |
gtgatatgttttaggatgtcctaatttgtatttctcgatttcctgtcaacataaattctaatgagtttatataattaaaagaataaatagaaagtaagct |
47694403 |
T |
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| Q |
311 |
atgaagaagttaacctcttgtggtgcagcacaaagaagatagaagcagtggtagtt |
366 |
Q |
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| T |
47694402 |
atgaagaagttaacctcttgtggtgcagcacaaagaagatagaagcagtggtagtt |
47694347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 35831258 - 35831414
Alignment:
| Q |
101 |
acctgctctttttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgact |
200 |
Q |
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| T |
35831258 |
acctgatctttgtgacctattccaacaatacccatagctctacgggtggcgagatactcatgagcatcatttacatcagccagttcatagcattgtgact |
35831357 |
T |
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| Q |
201 |
ggttaaggtagtgatatgttttaggatgtcctaatttgtatttctcgatttcctgtc |
257 |
Q |
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| T |
35831358 |
ggttaaggtagtgaaacgatttaggatttcctaatttgtatttctcaatttcctgtc |
35831414 |
T |
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