View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11114_low_8 (Length: 358)
Name: NF11114_low_8
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 5860447 - 5860139
Alignment:
| Q |
9 |
gagatgaaccagagctgcttagatcaggagaattgttaatgagggagtttgaagaatgacacaggccgacttgctacagttgctgcaacagattcttatg |
108 |
Q |
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| T |
5860447 |
gagaagaaccagagctgcttagatcaggagaattgttaatgagggagtttgaagaatgacacaggccgacttgctacagttgctgcaacagattcttatg |
5860348 |
T |
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| Q |
109 |
atcatagctccaacgaatgtagatatccttgatttaggatgttaacaccattaattttttccttaacttttgaacctgtttggtcaatggtcatcaagga |
208 |
Q |
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| T |
5860347 |
gtcatagctccaacgaatgtagctatccttgatttaggatgttaacaccattcattttttccttaacctttgaaccagtttggtcaatgatcatcaagga |
5860248 |
T |
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| Q |
209 |
aaagctaaaatgattttgtgattgtagataacttccttacttgttctggtttaatcaatagattaacttttagttggacttattagatgctaaacatggt |
308 |
Q |
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||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
5860247 |
aaagctaaaatgattttgtgattgtagataactacctttctagttctggtttaatcaataga-taacttttagttggacttattagatgctaaacaatgt |
5860149 |
T |
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| Q |
309 |
taattgtcta |
318 |
Q |
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|||||||||| |
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| T |
5860148 |
taattgtcta |
5860139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 5898622 - 5898317
Alignment:
| Q |
14 |
gaaccagagctgcttagatcaggagaattgttaatgagggagtttgaagaatgacacaggccgacttgctacagttgctgcaacagattcttatgatcat |
113 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
5898622 |
gaaccagagctgcttagatcagaagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattcttatggtcat |
5898523 |
T |
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| Q |
114 |
agctccaacgaatgtagatatccttgatttaggatgttaacaccattaattttttccttaacttttgaacctgtttggtcaatggtcatcaaggaaaagc |
213 |
Q |
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| T |
5898522 |
agttccaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaaggaaaagc |
5898423 |
T |
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| Q |
214 |
taaaatga-ttttgtgattgtagataacttccttacttgttctggtttaatcaatagattaacttttagttggacttattagatgctaaacatggttaat |
312 |
Q |
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|||||||| |||||||||||||||||| | |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5898422 |
taaaatgatttttgtgattgtagataagtacctttcttgttctggtttactcaatagattaactattagttggacttattagatgctaaacatggttaat |
5898323 |
T |
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| Q |
313 |
tgtcta |
318 |
Q |
| |
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|||||| |
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| T |
5898322 |
tgtcta |
5898317 |
T |
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