View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11114_low_9 (Length: 323)
Name: NF11114_low_9
Description: NF11114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11114_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 47694378 - 47694080
Alignment:
| Q |
7 |
gcagcacagagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctg |
106 |
Q |
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| T |
47694378 |
gcagcacaaagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctg |
47694279 |
T |
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| Q |
107 |
agattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaagagaatgatattttttaaactaataattggtaaaagaa |
206 |
Q |
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| T |
47694278 |
agattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaagagaatgatattttttaaactaataattgataaaagaa |
47694179 |
T |
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| Q |
207 |
tgaaggttaagtaggcttcatgtagtggtttatattccatttctggagagcaaaattgattaatggcaatcaatttaaatgctgtctcattgaatcttg |
305 |
Q |
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| T |
47694178 |
tgaaggttaagtaggcttcatgtagttgtttatattccatttctggagagcaaaattgattaatggcaatcaatttaaatgctgtctcattgaatcttg |
47694080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 35831503 - 35831655
Alignment:
| Q |
16 |
agaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctgagattcttc |
115 |
Q |
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| T |
35831503 |
agaagataaaagcagtggtagtttcgttcaggatcattaatttgacagacccgagatctctctagaaggtatgttcggatggctgctcctgagattcttc |
35831602 |
T |
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| Q |
116 |
cactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaa |
168 |
Q |
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| T |
35831603 |
cgctcttatcaaattggatctcaacaaatttaccaaaacggctgcaccattaa |
35831655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 31011261 - 31011420
Alignment:
| Q |
2 |
gaggagcagcacagagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgc |
101 |
Q |
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|||||| |||||||||||| ||||| ||||| || ||||| ||||| || | ||||||||| || ||| |||| ||||| || || | ||||||||| |
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| T |
31011261 |
gaggagaagcacagagaaggtagaaacagtgataattacgctctggatctgagatttggcaaacacgagatttctcgagaagataagttctaatggctgc |
31011360 |
T |
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| Q |
102 |
gcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgca |
161 |
Q |
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| T |
31011361 |
accggatattcgtccatacttatcaaattgaatctcaacaaattttccaaaacggctgca |
31011420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 29902588 - 29902625
Alignment:
| Q |
124 |
tcaaattggatctcaacaaacttaccaaaacgactgca |
161 |
Q |
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| T |
29902588 |
tcaaattgaatctccacaaacttaccaaaacgactgca |
29902625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 26465537 - 26465431
Alignment:
| Q |
54 |
aacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaa |
153 |
Q |
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|||||||||||| || ||||| ||||| ||||||||||| || || || || || || | ||| |||| |||||||| || |||||||||||||||||| |
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| T |
26465537 |
aacttggcaaacacgagatctttcaaggaggtacgtacggatcgcagctccagaaatcttcccattcttgtcaaattgaatttcaacaaacttaccaaaa |
26465438 |
T |
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| Q |
154 |
cgactgc |
160 |
Q |
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||||||| |
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| T |
26465437 |
cgactgc |
26465431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 52154475 - 52154512
Alignment:
| Q |
124 |
tcaaattggatctcaacaaacttaccaaaacgactgca |
161 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| |
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| T |
52154475 |
tcaaattgtatctcaacaaatttaccaaaacgactgca |
52154512 |
T |
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