View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11115_high_3 (Length: 543)
Name: NF11115_high_3
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11115_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 207 - 528
Target Start/End: Complemental strand, 25724595 - 25724273
Alignment:
| Q |
207 |
catttgcacatcaaaaggacaaaattaggaaaaataattaggagtaagtaatttctgaagtacaatcagggcataacgtcttatccaagttactcctaag |
306 |
Q |
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| T |
25724595 |
catttgcatatcaaaaagacaaaattaggaaatataattaggagtaagtaatttctgaagtacaatcagggcataacgtcttatccaagttactcctaag |
25724496 |
T |
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| Q |
307 |
ttaggaaaaataattaggagtaatttcttaaattaggaagtcttcagcaaagtatacttatctgtctcagttatttcacttcctaagtttattcattgtt |
406 |
Q |
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| T |
25724495 |
ttaggaaaaataattaggagtaatttcttaaattaggaagtcttcagcaaagtatacttatctgtctcagttatttcacttcctaagtttattcgttgtt |
25724396 |
T |
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| Q |
407 |
tctatcattacatatttacatgtgtttgtgctggggtatctttggtcccacaggaaccacctaagacaatgtcgacaagtgttgt-gtggcaatgcaaaa |
505 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
25724395 |
tctaccattacatatttacatgtgtttgtgctggggtatctttggtcccacaggaaccacctaagacaatgtcgataagtgttgtggtggcaatgcaaaa |
25724296 |
T |
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| Q |
506 |
actgtgatattgacagaaagtga |
528 |
Q |
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| T |
25724295 |
actgtgatattgacagaaagtga |
25724273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 25724761 - 25724648
Alignment:
| Q |
22 |
gggagttaacagaatatcaatctgtggacactatgtgaaatagattaaaaaatgcaattaaacatatacttagtttttatgcaccacgcaaacatttgac |
121 |
Q |
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| T |
25724761 |
gggagttaatagaatatcaatctgtggacact--gtgaaatagattaaaaaatgcaattaaacatatacttagtttttatgcaccacgcaaacatttgac |
25724664 |
T |
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| Q |
122 |
ccattttcagtttacg |
137 |
Q |
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|||||||||||||||| |
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| T |
25724663 |
ccattttcagtttacg |
25724648 |
T |
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