View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11115_high_4 (Length: 507)
Name: NF11115_high_4
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11115_high_4 |
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| [»] scaffold1163 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Complemental strand, 5952410 - 5951935
Alignment:
| Q |
15 |
atgaagcaccgaggcaaacaccgaatatgacactgacatgttgacaggttggaggtattcttggaaaaggggcaatgaaaatagtgtataaagccattga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952410 |
atgaagcaccgaggcaaacaccgaatatgacactgacatgtggacaggttggaggtattcttggaaaaggggcaatgaaaatagtgtataaagccattga |
5952311 |
T |
|
| Q |
115 |
taaggtccttggaatagaagtagcatggaaccaagtcaaactcaatgaagcgcttcgtacgccagaggacttagaaaggctttatttagaggttcatctg |
214 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952310 |
taaggtccttggaatagaaatagcatggaaccaagtcaaactcaatgaagcacttcgtacgccagaggacttagaaaggctttatttagaggttcatctc |
5952211 |
T |
|
| Q |
215 |
ctcagtaacctcaaacaccaatccatcatgcaattctatacctcgtggattgatgtcgacaaccggactttcaacttcattacagaaatgttcacttctg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5952210 |
ctcagtaacctcaaacaccaatccatcatgcaattctatacctcgtggattgatgtcgacaaccgaactttcaacttcattacagaaatgttcacttctg |
5952111 |
T |
|
| Q |
315 |
gaacacttagagagtaaccacatgaacataatctctatttcactttcttttgactagttttgtgtttaatcagtaattgataagttttcggattttgcag |
414 |
Q |
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| T |
5952110 |
gaacacttagagagtaaccacatgaacataatctctatttcacttttttttgactagttttgtgtttaatcagtaattgataagttttcggattttgcag |
5952011 |
T |
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| Q |
415 |
atacaggaagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatcttacacggtcttgtt |
490 |
Q |
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| T |
5952010 |
atacaggaagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatcttacacggtcttgtt |
5951935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 31952674 - 31952578
Alignment:
| Q |
63 |
ttggaggtattcttggaaaaggggcaatgaaaatagtgtataaagccattgataaggtccttggaatagaagtagcatggaaccaagtcaaactcaa |
159 |
Q |
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| T |
31952674 |
ttggagatgttcttggaaaaggggcaatgaagacagtatacaaagcaattgatgaagtacttggaatagaggtagcatggaaccaagtcagactcaa |
31952578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 461
Target Start/End: Complemental strand, 22397308 - 22397077
Alignment:
| Q |
240 |
tcatgcaattctatacctcgtggattgatgtcgacaaccggactttcaacttcattacagaaatgttcacttctggaacacttagagagtaaccacatga |
339 |
Q |
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| T |
22397308 |
tcatgcaattcaatacctcttggattgatgttaacgacatgaatatcaacttcattacataaatgttcacttccggtgcactcagagagttacaacataa |
22397209 |
T |
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| Q |
340 |
acataatc------tctatttcactttcttttgactagttttgtgtttaatcagtaattgataagttttcggattttg------cagatacaggaagaaa |
427 |
Q |
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| T |
22397208 |
acatgatcatgatatttatttcactttcttt--actagctttttgttaaatcaatagttgacgagctttaggcttttgtacagatagatacaggaagaaa |
22397111 |
T |
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| Q |
428 |
tataagcatgtagacatgcaagcaataaagagtt |
461 |
Q |
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| T |
22397110 |
tataatcatataggcatgtaagcaataaagagtt |
22397077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 22397380 - 22397341
Alignment:
| Q |
123 |
ttggaatagaagtagcatggaaccaagtcaaactcaatga |
162 |
Q |
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| T |
22397380 |
ttggaatagaggtagcatggaaccaagtcaaactcaatga |
22397341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1163 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1163
Description:
Target: scaffold1163; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 478
Target Start/End: Complemental strand, 2533 - 2468
Alignment:
| Q |
413 |
agatacaggaagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatctta |
478 |
Q |
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| T |
2533 |
agatacaggaagaaatataatcatataggcatgtaagcaataaagaattagcctcgccaaatctta |
2468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 28188175 - 28188230
Alignment:
| Q |
60 |
aggttggaggtattcttggaaaaggggcaatgaaaatagtgtataaagccattgat |
115 |
Q |
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| T |
28188175 |
aggttggagctattcttggaaaaggggaaaagaaaacattgtataaagcaattgat |
28188230 |
T |
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