View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11115_high_6 (Length: 340)

Name: NF11115_high_6
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11115_high_6
NF11115_high_6
[»] chr1 (12 HSPs)
chr1 (1-323)||(47744064-47744386)
chr1 (2-323)||(47716301-47716622)
chr1 (4-323)||(47711552-47711871)
chr1 (1-323)||(47758447-47758769)
chr1 (3-148)||(47701299-47701444)
chr1 (62-225)||(6497778-6497941)
chr1 (75-225)||(6510745-6510895)
chr1 (75-186)||(47770950-47771061)
chr1 (4-180)||(6525264-6525440)
chr1 (6-186)||(47774840-47775020)
chr1 (75-225)||(6515135-6515285)
chr1 (75-225)||(6503125-6503275)
[»] chr8 (1 HSPs)
chr8 (1-281)||(11224684-11224964)
[»] chr5 (5 HSPs)
chr5 (5-252)||(28828946-28829193)
chr5 (1-224)||(28859961-28860184)
chr5 (2-252)||(28854604-28854854)
chr5 (6-230)||(27368599-27368823)
chr5 (1-252)||(28874531-28874782)
[»] scaffold0341 (2 HSPs)
scaffold0341 (75-225)||(12425-12575)
scaffold0341 (75-225)||(4804-4954)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 47744064 - 47744386
Alignment:
Q  1 ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47744064 ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa 47744163  T
Q  101 cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47744164 cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca 47744263  T
Q  201 atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47744264 atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatacatacacaaaattagatattttagttgtcatatgtaagagagcaac 47744363  T
Q  301 aatctaataaagcatatattatg 323  Q
    |||||||||||||||||||||||    
T  47744364 aatctaataaagcatatattatg 47744386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 323
Target Start/End: Original strand, 47716301 - 47716622
Alignment:
Q  2 taatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaac 101  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||     
T  47716301 taatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcgataccaaaatctgatattttaggattcaat 47716400  T
Q  102 ttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaa 201  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  47716401 ttttcgtctaagagaatgttacccgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaaggcctctagcaatacctccaa 47716500  T
Q  202 tgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaaca 301  Q
    |||||||||||||||||||||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||    
T  47716501 tgattttgtagcgcctttcccagtctaattgtgctttctttattggatctatacatacacaaaattagatattttagtagtcatatgcatgagagcaaca 47716600  T
Q  302 atctaataaagcatatattatg 323  Q
    ||||||||||||||||||||||    
T  47716601 atctaataaagcatatattatg 47716622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 47711552 - 47711871
Alignment:
Q  4 atacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt 103  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||| || ||||||||||||||||||||    
T  47711552 atacttactatgttccaacgattttatttgtatttacttgagtttgatcgataagaagtagtctggctatgccaaagtctgatattttaggattcaactt 47711651  T
Q  104 ttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaatg 203  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || || |||||||||    
T  47711652 ttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaaggtaaagaaggcctctagctatacctccaatg 47711751  T
Q  204 attttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaacaat 303  Q
    |||||||||||||||||||||||||| | | |||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  47711752 attttgtagcgcctttcccaatccaaacatgctttttttattggatctatacatacacaaaattagctattttagtagtcatatgtaagagaacaacaat 47711851  T
Q  304 ctaataaagcatatattatg 323  Q
    ||||||||||||||||||||    
T  47711852 ctaataaagcatatattatg 47711871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 47758447 - 47758769
Alignment:
Q  1 ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||| || |||||||| |||||||||||||||||    
T  47758447 ctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaa 47758546  T
Q  101 cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||| ||||||    
T  47758547 cttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctcca 47758646  T
Q  201 atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaac 300  Q
    |||||||| ||||||||||||||||||||  || |||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||     
T  47758647 atgattttatagcgcctttcccaatccaactgtgctttctttattggatctatacatacacaaaattagttattttagtagtcatatgtaagagagcaat 47758746  T
Q  301 aatctaataaagcatatattatg 323  Q
     ||||||||||||||||||||||    
T  47758747 gatctaataaagcatatattatg 47758769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 47701299 - 47701444
Alignment:
Q  3 aatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact 102  Q
    |||||||||||||| ||||||| ||||| |||||| |||||||||||||| ||||||| ||| ||||| ||||||||||| ||||||||||||||||  |    
T  47701299 aatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaagaattagcctggccataccaaaatctgatattttaggattcattt 47701398  T
Q  103 tttcgtccaagagaatgttacttgctttaagatcacgatgtataat 148  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  47701399 tttcatccaagagaatgttacttgctttaagatcacgatgtataat 47701444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 6497778 - 6497941
Alignment:
Q  62 tagtctggcaataccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaa 161  Q
    |||||| || || |||||||||||||| ||||||||||  | ||| || |||||||||||||||||||| ||||||||||| ||||| || ||| |||||    
T  6497778 tagtcttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaa 6497877  T
Q  162 tcctgatgaaggtaaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat 225  Q
    ||||  |||||||||||||  ||||  ||||| |||  |||||||||||||||| |||||||||    
T  6497878 tcctcgtgaaggtaaagaatgcctcgagcaatacctaaaatgattttgtagcgcatttcccaat 6497941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 6510745 - 6510895
Alignment:
Q  75 ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt 174  Q
    |||||||||| ||| |||||||||| || ||| ||||||||||| || |||||||| ||||||||||| |||| ||| ||| |||||||||  |||||||    
T  6510745 ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt 6510844  T
Q  175 aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat 225  Q
    ||||||  ||||  ||||| |||  ||||||||||||||||||| ||||||    
T  6510845 aaagaatgcctcgagcaatacctaaaatgattttgtagcgccttccccaat 6510895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 47771061 - 47770950
Alignment:
Q  75 ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt 174  Q
    |||||||||||||| |||||||||| ||  ||||| ||||||||||| |||||||| | |||||| |||||||| || ||  ||||||||| |||||| |    
T  47771061 ccaaaatcagatatcttaggattcatctcatcgtctaagagaatgttgcttgctttgatatcacggtgtataattcgtaggcgagaatcctcatgaagat 47770962  T
Q  175 aaagaagacctc 186  Q
    ||||||||||||    
T  47770961 aaagaagacctc 47770950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 6525440 - 6525264
Alignment:
Q  4 atacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt 103  Q
    |||||||||| ||||| || ||| | ||||||||  | |||||||| || |||  ||  ||||| || || |||||||| | ||| |||||||||| ||     
T  6525440 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 6525341  T
Q  104 ttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaa 180  Q
    ||| || |||||||| || |||||||| ||||||||||| |||||||| ||  ||||||||| ||||||||||||||    
T  6525340 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaa 6525264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 47775020 - 47774840
Alignment:
Q  6 acttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt 105  Q
    |||||||| |||||||| |||||| |||||||  ||||||||||||| | || ||  | ||| || |  |||||||| |||||||||||||||| |   |    
T  47775020 acttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcggatattttaggattcatcccgt 47774921  T
Q  106 cgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc 186  Q
    |||| |||||||| || || ||||| |||||||| |||||||| || ||  ||||||||| |||||| |||| ||||||||    
T  47774920 cgtctaagagaatattgctagctttgagatcacggtgtataatgcggaggcgagaatcctcatgaagataaataagacctc 47774840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 6515135 - 6515285
Alignment:
Q  75 ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt 174  Q
    |||||||||| ||| |||||||||| |  ||  || |||||||| || |||||||| ||||||||||| |||| ||| | | ||||||||| ||| ||||    
T  6515135 ccaaaatcagctatcttaggattcatccgtttatctaagagaatattgcttgctttgagatcacgatgaataacacgcactcgagaatcctcatggaggt 6515234  T
Q  175 aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat 225  Q
    ||||||  ||||  ||||| |||  ||||||| ||||||||||||||||||    
T  6515235 aaagaatgcctcgagcaatacctaaaatgattgtgtagcgcctttcccaat 6515285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 6503125 - 6503275
Alignment:
Q  75 ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt 174  Q
    |||||||||| ||| ||||||||||  | ||| ||||||||||| ||||||||||| ||||| | ||| |||| ||||| | |||||||||| |||||||    
T  6503125 ccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggt 6503224  T
Q  175 aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat 225  Q
    | ||||  ||||  ||||| |||  |||||||  ||||||| || ||||||    
T  6503225 atagaatgcctcgagcaatacctaaaatgattaggtagcgctttccccaat 6503275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 11224964 - 11224684
Alignment:
Q  1 ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11224964 ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa 11224865  T
Q  101 cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11224864 cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca 11224765  T
Q  201 atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11224764 atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatacatacacaaaattagatattttagttg 11224684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 28828946 - 28829193
Alignment:
Q  5 tacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaacttt 104  Q
    ||||||||| |||||||| ||| || |||||||  |||| |||||||| ||||||| |||||| || || |||||||| | ||| |||| |||||  | |    
T  28828946 tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtct 28829045  T
Q  105 tcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaatga 204  Q
     | || ||||||||||| ||||||||||||||||| |||||||| || ||| ||||||| | |||||| ||||||| |||||  | ||| |||  |||||    
T  28829046 ccatctaagagaatgttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatga 28829145  T
Q  205 ttttgtagcgcctttcccaatccaatcgttctttgtttattggatcta 252  Q
    ||||||||||| |||||||||| ||| || |||| ||| |||||||||    
T  28829146 ttttgtagcgcttttcccaatctaattgtgctttctttgttggatcta 28829193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28859961 - 28860184
Alignment:
Q  1 ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa 100  Q
    |||| |||||||| |||||||| | | || |||||||  |||| |||||||| |  |||| |||||| || || |||||||| || || |||| |||||     
T  28859961 ctaacacttactaggttccaacaactctacttgtatttgcttgggtttgatccaatagaattagtcttgccatgccaaaatctgaaatcttagcattcat 28860060  T
Q  101 cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca 200  Q
     | |||||| | ||||||||| |||||||| ||||| || ||||||||||| ||| ||||||||| ||||||||||||||  ||||  ||||| |||  |    
T  28860061 gtcttcgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcctcatgaaggtaaagaacgcctcgagcaataccttga 28860160  T
Q  201 atgattttgtagcgcctttcccaa 224  Q
    ||||||||||||||| ||||||||    
T  28860161 atgattttgtagcgcttttcccaa 28860184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 28854604 - 28854854
Alignment:
Q  2 taatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaac 101  Q
    |||||||||||| |||||||| |   || |||||||  |||| |||||||| ||||||| |||||| || || || ||||| ||||| |||| |||||      
T  28854604 taatacttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatg 28854703  T
Q  102 ttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaa 201  Q
    ||||| || |||||||| || | |||||| |||||||| |||||||| || ||| ||||||||| |||||| || |||| |||||  ||||| |||  ||    
T  28854704 ttttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcctcatgaagatagagaacacctcgagcaatacctttaa 28854803  T
Q  202 tgattttgtagcgcctttcccaatccaatcgttctttgtttattggatcta 252  Q
    |||||||||||||  |||||||||| ||| || |||| ||| | |||||||    
T  28854804 tgattttgtagcgtttttcccaatctaattgtgctttctttgtaggatcta 28854854  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 27368599 - 27368823
Alignment:
Q  6 acttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt 105  Q
    |||||||| |||||||||||| |||||||| |  ||| ||||||| ||| || || | |||| || |  |||||||| ||||| |||||||||| || ||    
T  27368599 acttactaggttccaacgattctatttgtacttccttcagtttgaccgataacaaatcgtcttgccaatccaaaatcggatatcttaggattcatctctt 27368698  T
Q  106 cgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaatgat 205  Q
    |||| || ||||| || |||||||| |||||||| |||||||| || |   |||||||||  ||||| |||||||||||||  ||||| |||   |||||    
T  27368699 cgtctaaaagaatattgcttgctttgagatcacggtgtataatgcgcaagcgagaatcctcgtgaagataaagaagacctcgagcaataccttttatgat 27368798  T
Q  206 tttgtagcgcctttcccaatccaat 230  Q
     ||||||||| ||| ||||| ||||    
T  27368799 attgtagcgcgtttgccaattcaat 27368823  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 28874531 - 28874782
Alignment:
Q  1 ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa 100  Q
    |||| |||||||| ||| |||| | | || |||||||  |||| |||||||| |||||||  ||||| || || |||||||| || || |||| |||||     
T  28874531 ctaacacttactaggtttcaacaactctacttgtatttgcttgggtttgatccacaagaataagtcttgccatgccaaaatctgagatcttagcattcac 28874630  T
Q  101 cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca 200  Q
     | |||||| ||||||||||| |||||||| ||||| || ||||||||||| |||   ||||||  |||||| |||||||  ||||  ||||| |||  |    
T  28874631 gtcttcgtctaagagaatgttgcttgctttgagatcgcggtgtataatacgcagtcttgaatccccatgaagataaagaacgcctcgagcaatgccttga 28874730  T
Q  201 atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatcta 252  Q
    ||||||||||||||| | |||||||| ||| || |||| || | ||||||||    
T  28874731 atgattttgtagcgcttctcccaatctaattgtgctttcttcagtggatcta 28874782  T

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Target: scaffold0341 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 12425 - 12575
Alignment:
Q  75 ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt 174  Q
    |||||||||| ||| |||||||||| || ||| ||||||||||| || |||||||| ||||||||||| |||| ||| ||| |||||||||  |||||||    
T  12425 ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt 12524  T
Q  175 aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat 225  Q
    ||||||  ||||  ||||| |||  ||||||||||||||||||| ||||||    
T  12525 aaagaatgcctcgagcaatacctaaaatgattttgtagcgccttccccaat 12575  T

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Target: scaffold0341; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 4804 - 4954
Alignment:
Q  75 ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt 174  Q
    |||||||||| ||| ||||||||||  | ||| ||||||||||| ||||||||||| ||||| | ||| |||| ||||| | |||||||||| |||||||    
T  4804 ccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggt 4903  T
Q  175 aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat 225  Q
    | ||||  ||||  ||||| |||  |||||||  ||||||| || ||||||    
T  4904 atagaatgcctcgagcaatacctaaaatgattaggtagcgctttccccaat 4954  T

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