View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11115_high_9 (Length: 301)

Name: NF11115_high_9
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11115_high_9
NF11115_high_9
[»] chr7 (2 HSPs)
chr7 (1-286)||(33274190-33274475)
chr7 (48-208)||(3160216-3160376)
[»] chr6 (3 HSPs)
chr6 (30-213)||(10029918-10030101)
chr6 (78-208)||(4038684-4038814)
chr6 (76-140)||(10554660-10554724)
[»] chr8 (2 HSPs)
chr8 (78-204)||(12508608-12508734)
chr8 (78-211)||(35665872-35666005)
[»] chr4 (5 HSPs)
chr4 (81-127)||(2428679-2428725)
chr4 (77-193)||(32072592-32072708)
chr4 (155-193)||(46024060-46024098)
chr4 (155-193)||(46265269-46265307)
chr4 (78-135)||(47101350-47101407)
[»] chr2 (2 HSPs)
chr2 (86-124)||(15403650-15403688)
chr2 (81-127)||(44648686-44648732)
[»] chr3 (1 HSPs)
chr3 (78-127)||(43490075-43490124)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 33274190 - 33274475
Alignment:
Q  1 tcctggaagcaagaggagaatccaatgagacatgagtgatgaagttggttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33274190 tcctggaagcaagaggagaatccaatgagacatgagtgatgaagttggttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagc 33274289  T
Q  101 tgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatctccctgatggcctttgtctaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33274290 tgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatctccctgatggcctttgcctaaca 33274389  T
Q  201 ccaacaaacttgtttgtgttgttgctgtttctgtttcttcctttgaattttcctcctttgttggttactgaaattcctgctctctg 286  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33274390 ccaacaaacttgtttgtgttattgctgtttctgtttcttcctttgaattttcctcctttgttggttactgaaattcctgctttctg 33274475  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 3160376 - 3160216
Alignment:
Q  48 gttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttct 147  Q
    |||| |||||| ||||| ||||| |  ||||||||||||||||| ||||| || ||||| |||||||| ||||| ||||| | ||| | |||||||||||    
T  3160376 gttctagtgttggaaccgcgaagtatacatgcagcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttct 3160277  T
Q  148 gagttgtgtctttgatctcagctacccatctccctgatggcctttgtctaacaccaacaaa 208  Q
    || | || ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3160276 gaatggtatcttttatctcagctacccatcttcctgatggcctttgtctcacaccaacaaa 3160216  T

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Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 10030101 - 10029918
Alignment:
Q  30 acatgagtgatgaagttggttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaa 129  Q
    ||||| |||| ||||||||| ||||| || ||||| ||||||||    || ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  10030101 acatgtgtgacgaagttggtacgagttttggaaccgcgaagaagtgtcgcggcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaa 10030002  T
Q  130 gccacattcttatcttctgagttgtgtctttgatctcagctacccatctccctgatggcctttgtctaacaccaacaaacttgt 213  Q
    ||||||||||||| || || |||||||| || |||||||| ||  |||| |||||||| |||||||| || |||||||||||||    
T  10030001 gccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctgatggtctttgtctcaccccaacaaacttgt 10029918  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 4038814 - 4038684
Alignment:
Q  78 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc 177  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||||| ||||| | ||| | ||||||||| ||| | || ||||| |||||||| |||||||    
T  4038814 gcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttttgaatggtatctttaatctcagcaacccatc 4038715  T
Q  178 tccctgatggcctttgtctaacaccaacaaa 208  Q
    | || ||||||||||||| ||| ||||||||    
T  4038714 tacccgatggcctttgtcgaacgccaacaaa 4038684  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 10554724 - 10554660
Alignment:
Q  76 atgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattctt 140  Q
    |||||||||||||||||||  |||||||  | |||||||| ||||| || |||||||||| ||||    
T  10554724 atgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactctt 10554660  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 12508608 - 12508734
Alignment:
Q  78 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc 177  Q
    |||||||| || ||||||| ||| ||||| || | ||| ||| | ||||||||||| | |||||  |  |||| || |||||||||||||||||||||||    
T  12508608 gcagcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatc 12508707  T
Q  178 tccctgatggcctttgtctaacaccaa 204  Q
    | ||||||||||||||||| |||||||    
T  12508708 tacctgatggcctttgtctcacaccaa 12508734  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 35666005 - 35665872
Alignment:
Q  78 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc 177  Q
    ||||||||||| ||||||| ||| ||||||||||| || | | | || ||||||||||| || || ||||  | ||||||||| ||||| ||| |||||     
T  35666005 gcagcttcatcgtaagctcgagcagcttcctcagcagttttataggtaccaagccacatcctaatgttctttgatgtgtcttttatctctgctgcccatt 35665906  T
Q  178 tccctgatggcctttgtctaacaccaacaaactt 211  Q
    | ||||| |  |||||||| || |||||||||||    
T  35665905 ttcctgaagctctttgtctcactccaacaaactt 35665872  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 2428679 - 2428725
Alignment:
Q  81 gcttcatcataagctctagctgcttcctcagctgtctcaaatgttcc 127  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  2428679 gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcc 2428725  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 32072708 - 32072592
Alignment:
Q  77 tgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccat 176  Q
    |||||| ||||||||||||||||| || || ||| | || ||| | || || | ||||| |||||| |||||  | ||||||||||||||||| ||||||    
T  32072708 tgcagcctcatcataagctctagcagcctcttcaccagtgtcataggtccccaaccacaatcttatgttctgtatggtgtctttgatctcagccacccat 32072609  T
Q  177 ctccctgatggcctttg 193  Q
    |||||||| || |||||    
T  32072608 ctccctgaaggtctttg 32072592  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 46024098 - 46024060
Alignment:
Q  155 gtctttgatctcagctacccatctccctgatggcctttg 193  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  46024098 gtctttgatctcagctatccatcttcctgatggcctttg 46024060  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 46265269 - 46265307
Alignment:
Q  155 gtctttgatctcagctacccatctccctgatggcctttg 193  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  46265269 gtctttgatctcagctatccatcttcctgatggcctttg 46265307  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 47101350 - 47101407
Alignment:
Q  78 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccaca 135  Q
    ||||||| |||||| ||||| |||||||| || ||||| ||||||||||| |||||||    
T  47101350 gcagcttgatcatatgctcttgctgcttcttctgctgtttcaaatgttcctagccaca 47101407  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 15403688 - 15403650
Alignment:
Q  86 atcataagctctagctgcttcctcagctgtctcaaatgt 124  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  15403688 atcataagctctagctgcttcttcagctgtgtcaaatgt 15403650  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 44648686 - 44648732
Alignment:
Q  81 gcttcatcataagctctagctgcttcctcagctgtctcaaatgttcc 127  Q
    ||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  44648686 gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcc 44648732  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 43490075 - 43490124
Alignment:
Q  78 gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttcc 127  Q
    |||||||||||||| |||||||| ||| | |||||||| |||||||||||    
T  43490075 gcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgttcc 43490124  T

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