View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11115_low_1 (Length: 781)
Name: NF11115_low_1
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11115_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 605; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 770
Target Start/End: Original strand, 779796 - 780555
Alignment:
| Q |
18 |
aattcttgagctgagaatgttagttgtttattaatttcatggnnnnnnn-attgtaatggagagtcatagtcaataggataatgatctatgaaacaccgt |
116 |
Q |
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| T |
779796 |
aattcttgagctgagaatgttagttgtttattaatttcatggtttgttttattgtaatggagagtcatagtcaataggataatgatctatgaaacactgt |
779895 |
T |
|
| Q |
117 |
tacggacttaagacacgtaaaaattaataagcgaatgagtttattgaacttatcacatttaatttgtccgacacatgttagacatcatagacgtcatcta |
216 |
Q |
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| T |
779896 |
tacggacttaagacacgtaaaaattaataagcgaatgagtttattgaacttatcacagtt-----gtccgacacatgttagacatcatagacgtcatcta |
779990 |
T |
|
| Q |
217 |
tcataagtgtatgtgctataaagctaatgacctagacaatccatcaacaaacagtgacgaagctggttggaaaccgttta-------ggaatcaatttga |
309 |
Q |
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| T |
779991 |
tcataagtgtatgtgctataaagctaatgacctagacaatccatcaacaaacagcgacgaagctggttggaaaccgtttaaatactaggaatcaatttga |
780090 |
T |
|
| Q |
310 |
ttgtgcgtgatggaatcaattttgtgttttatatcacttaactattcatta----ctggaatagtaacaaataacactaaatggttatcaactttactat |
405 |
Q |
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| T |
780091 |
ttgtgcatgatggaatcaattttgtgttttatatcacttaactattcattagctactggaatagtaacaaataacactaaatggttatcaactttactat |
780190 |
T |
|
| Q |
406 |
tttaaggnnnnnnnacacctttgttctttataatggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaactttgcaag |
504 |
Q |
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| T |
780191 |
tttaaggtttttttacacctttgttctttataatggacagctccaaatcaaggtaatggcatggatctggagaaatattcctggactcaaactttgcaag |
780290 |
T |
|
| Q |
505 |
agctcaatgtgaatgttccggtgccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagcc |
604 |
Q |
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| T |
780291 |
agctcaatgtgaatgttccggtgccaaatggaacaaaatcagggtttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagcc |
780390 |
T |
|
| Q |
605 |
accaattattgatgtaagcttttactcagttatatattcggagttactatcaaaagataaatcttacctgcgacatatatttgtgttatttttctaaatt |
704 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
780391 |
accaattattgatgtaagcttttactcagttatatattcgcagttactatcaaaagataaatcttacctgcgacatatatttgtgttattttt-gaaatt |
780489 |
T |
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| Q |
705 |
gatcgttccttttatctttcaatctgtaatttttagtttgtttgaagtttttgtgatgtctgtgct |
770 |
Q |
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| T |
780490 |
gatcgttccttttatctttcaatctgtaatttttagtttgtttgaagtttttgtgatgtctgtgct |
780555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 427 - 638
Target Start/End: Complemental strand, 771133 - 770921
Alignment:
| Q |
427 |
tgttctttataatggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtgaatgttccgg |
525 |
Q |
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| T |
771133 |
tgttttttataatggacagcaccaaatcagggtaatggtatggatttggagaagtattcctggactcaaactttgcaagagctgaatgtgaatgttccag |
771034 |
T |
|
| Q |
526 |
tgccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagctt |
625 |
Q |
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| T |
771033 |
tgccaaatggaacaaaatcagggtttgtcatctgtgagattaagaagaaccatctaaaagttggactcaaagggcagccaccaattattgatgtaagcat |
770934 |
T |
|
| Q |
626 |
ttactcagttata |
638 |
Q |
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| T |
770933 |
ttactcagttata |
770921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 424 - 629
Target Start/End: Original strand, 784904 - 785110
Alignment:
| Q |
424 |
ctttgttctttataatggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtgaatgttc |
522 |
Q |
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||||| ||||| |||| |||| |||| ||||| |||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |
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| T |
784904 |
ctttgctctttttaattgacagctcccaatcagggtaatggtatggatctggagaaatattcttggactcaaactcttcaagagctcaatgtgaatgttc |
785003 |
T |
|
| Q |
523 |
cggtgccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaag |
622 |
Q |
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| T |
785004 |
cagtgccaaacggaacaaaatcaaggtttgtcacatgtgagataaagaagaaccatctaaaagttggaatcaaagggcagccaccaattattgatgtaag |
785103 |
T |
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| Q |
623 |
cttttac |
629 |
Q |
| |
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||||||| |
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| T |
785104 |
cttttac |
785110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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