View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11115_low_2 (Length: 722)

Name: NF11115_low_2
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11115_low_2
NF11115_low_2
[»] chr5 (1 HSPs)
chr5 (45-673)||(2263839-2264471)


Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 45 - 673
Target Start/End: Complemental strand, 2264471 - 2263839
Alignment:
Q  45 aaaccaaccactaaaaatgatttgttttggttcggtttctaaaatcttcttgagtctacttgttata------tgtaagctttgtgttcaaggtatttgc 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||    
T  2264471 aaaccaaccactaaaaatgatttgttttggttcggtttctaaaatcttcttgagtctacttgttatacttatatgtaagctttgtgttcaaggtatttgc 2264372  T
Q  139 ctcaaaattaaatatgaaggtctccatatccttcacagtcatatgattacttgatt--attttaatacaaagggtctaatacaccacctaaaaagtggcg 236  Q
    ||||||||| |||||||||||||||||||||||||||||  | |||||| || |    ||||||||||||||||||||||||||||||||||||||||||    
T  2264371 ctcaaaattgaatatgaaggtctccatatccttcacagtact-tgattattttacagaattttaatacaaagggtctaatacaccacctaaaaagtggcg 2264273  T
Q  237 taagaaacgaccaaagagagaacgagaataacgattggtgccaatttggttggatttattatcacggcggatctaacattgtttttcacatcgtacgaat 336  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2264272 taagaaacgaccaaagagacaatgagaataacgattggtgccaatttggttggatttattatcacggcggatctaacattgtttttcacatcgtacgaat 2264173  T
Q  337 tcttgcctttatcaatttggttggaattattatcatgaagactcgtcttcttcatttttgcaccaatcgttatttcaagggacttgatttcatacatatg 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  2264172 tcttgcctttatcaatttggttggaattattatcatgaagactcgtcttcttcattttggcaccaatcgttatttcaagggacttgatttcgtacatatg 2264073  T
Q  437 aagacagtcaaatcaagtcgtagaaaaatattatcaatatataaaattgattttatacagnnnnnnncttcaaattggacgaaataagtatttggtgtct 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||| ||||||||||||||| |||    
T  2264072 aagacagtcaaatcaagtcgtagaaaaatattatcaatatataaaatttattttatacattttttttcttcaaattggactaaataagtatttggtctct 2263973  T
Q  537 ataaatattttaaattttgcttttagtctttctnnnnnnnttcttccatttgcggtcctcttaatattttccaataccacttataactgtgctcacgtgg 636  Q
    ||||||||||||||||||||||||||||||| |       |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  2263972 ataaatattttaaattttgcttttagtcttttt---caaattcttccatttgcggtcctcctaatatttttcaataccacttataactgtgctcacgtgg 2263876  T
Q  637 attccttcaaaatttgaatttttatcttgcaatcatg 673  Q
    |||| ||||||||||||||||||||||||||||||||    
T  2263875 attcattcaaaatttgaatttttatcttgcaatcatg 2263839  T

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