View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11115_low_3 (Length: 553)
Name: NF11115_low_3
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11115_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 187 - 548
Target Start/End: Complemental strand, 33488795 - 33488439
Alignment:
| Q |
187 |
ttcttaacaaatattttatcaaaacaaacaaaatacttatataatattgacttaagcagtctcttgtatattttgattatttttcagttgatgatgttgt |
286 |
Q |
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| T |
33488795 |
ttcttaacaaatattttatcaaaacaaacaaaatacttatataatattgacttaagcagtctcttgtatattttgattatttttcatttgatg---ttgt |
33488699 |
T |
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| Q |
287 |
gactaaaatgatctcatctcatacaaggtaatcttgcacgtagatttaataccatggcttggtgattgaagggacgaatataaagaagttgaagctataa |
386 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
33488698 |
gaccaaaatgatctcatctcatacaaggtaatcttgcacgtagatttaataccatggcttggtgattggagggacgaata--aagaagttgaagctataa |
33488601 |
T |
|
| Q |
387 |
tgaaggtgtggaatgagccttacaaacaaaccgagtttatactccatttcatagtttatggagtataaacggaccatttaacagagggactaaacagtca |
486 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33488600 |
tgaaggtgtggaatgaaccttacaaacaaaccgagtttatactccatttcatagtttatagagtataaacggaccatttaacagagggactaaacagtca |
33488501 |
T |
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| Q |
487 |
cattactttacatgatttaattatttttcttaattttctgaccaagattatttcatctcact |
548 |
Q |
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| T |
33488500 |
cattactttacatgatttaattatttttcttaattttctgaccaagattatttcatctcact |
33488439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 33488868 - 33488821
Alignment:
| Q |
51 |
aacagctgaatttcttctatatgatggtgtaacaatctcatgtggcaa |
98 |
Q |
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| T |
33488868 |
aacagctgaatttcttctatatgatggtgtaacaatctcatgtggcaa |
33488821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 1611086 - 1611134
Alignment:
| Q |
51 |
aacagctgaatttcttctatatgatggtgtaacaatctcatgtggcaaa |
99 |
Q |
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|||||||||||||||||| | |||||||||||||||||| ||| |||| |
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| T |
1611086 |
aacagctgaatttcttctcaaggatggtgtaacaatctcaggtgtcaaa |
1611134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 1611151 - 1611179
Alignment:
| Q |
98 |
aatcattcatcatctctcttctatgataa |
126 |
Q |
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| T |
1611151 |
aatcattcatcatctctcttctatgataa |
1611179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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