View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11115_low_7 (Length: 340)
Name: NF11115_low_7
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11115_low_7 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 47744064 - 47744386
Alignment:
| Q |
1 |
ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744064 |
ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa |
47744163 |
T |
|
| Q |
101 |
cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744164 |
cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca |
47744263 |
T |
|
| Q |
201 |
atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744264 |
atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatacatacacaaaattagatattttagttgtcatatgtaagagagcaac |
47744363 |
T |
|
| Q |
301 |
aatctaataaagcatatattatg |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47744364 |
aatctaataaagcatatattatg |
47744386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 323
Target Start/End: Original strand, 47716301 - 47716622
Alignment:
| Q |
2 |
taatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
47716301 |
taatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcgataccaaaatctgatattttaggattcaat |
47716400 |
T |
|
| Q |
102 |
ttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaa |
201 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
47716401 |
ttttcgtctaagagaatgttacccgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaaggcctctagcaatacctccaa |
47716500 |
T |
|
| Q |
202 |
tgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaaca |
301 |
Q |
| |
|
|||||||||||||||||||||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
47716501 |
tgattttgtagcgcctttcccagtctaattgtgctttctttattggatctatacatacacaaaattagatattttagtagtcatatgcatgagagcaaca |
47716600 |
T |
|
| Q |
302 |
atctaataaagcatatattatg |
323 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47716601 |
atctaataaagcatatattatg |
47716622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 47711552 - 47711871
Alignment:
| Q |
4 |
atacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||| || |||||||||||||||||||| |
|
|
| T |
47711552 |
atacttactatgttccaacgattttatttgtatttacttgagtttgatcgataagaagtagtctggctatgccaaagtctgatattttaggattcaactt |
47711651 |
T |
|
| Q |
104 |
ttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaatg |
203 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
47711652 |
ttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaaggtaaagaaggcctctagctatacctccaatg |
47711751 |
T |
|
| Q |
204 |
attttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaacaat |
303 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47711752 |
attttgtagcgcctttcccaatccaaacatgctttttttattggatctatacatacacaaaattagctattttagtagtcatatgtaagagaacaacaat |
47711851 |
T |
|
| Q |
304 |
ctaataaagcatatattatg |
323 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47711852 |
ctaataaagcatatattatg |
47711871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 47758447 - 47758769
Alignment:
| Q |
1 |
ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
47758447 |
ctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaa |
47758546 |
T |
|
| Q |
101 |
cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca |
200 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||| |
|
|
| T |
47758547 |
cttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctcca |
47758646 |
T |
|
| Q |
201 |
atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaac |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
47758647 |
atgattttatagcgcctttcccaatccaactgtgctttctttattggatctatacatacacaaaattagttattttagtagtcatatgtaagagagcaat |
47758746 |
T |
|
| Q |
301 |
aatctaataaagcatatattatg |
323 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47758747 |
gatctaataaagcatatattatg |
47758769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 47701299 - 47701444
Alignment:
| Q |
3 |
aatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
102 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| |||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||| | |
|
|
| T |
47701299 |
aatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaagaattagcctggccataccaaaatctgatattttaggattcattt |
47701398 |
T |
|
| Q |
103 |
tttcgtccaagagaatgttacttgctttaagatcacgatgtataat |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47701399 |
tttcatccaagagaatgttacttgctttaagatcacgatgtataat |
47701444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 6497778 - 6497941
Alignment:
| Q |
62 |
tagtctggcaataccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaa |
161 |
Q |
| |
|
|||||| || || |||||||||||||| |||||||||| | ||| || |||||||||||||||||||| ||||||||||| ||||| || ||| ||||| |
|
|
| T |
6497778 |
tagtcttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaa |
6497877 |
T |
|
| Q |
162 |
tcctgatgaaggtaaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
225 |
Q |
| |
|
|||| ||||||||||||| |||| ||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
6497878 |
tcctcgtgaaggtaaagaatgcctcgagcaatacctaaaatgattttgtagcgcatttcccaat |
6497941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 6510745 - 6510895
Alignment:
| Q |
75 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
174 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||| ||||||||||| || |||||||| ||||||||||| |||| ||| ||| ||||||||| ||||||| |
|
|
| T |
6510745 |
ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt |
6510844 |
T |
|
| Q |
175 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
225 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
6510845 |
aaagaatgcctcgagcaatacctaaaatgattttgtagcgccttccccaat |
6510895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 47771061 - 47770950
Alignment:
| Q |
75 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
174 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| ||||||||||| |||||||| | |||||| |||||||| || || ||||||||| |||||| | |
|
|
| T |
47771061 |
ccaaaatcagatatcttaggattcatctcatcgtctaagagaatgttgcttgctttgatatcacggtgtataattcgtaggcgagaatcctcatgaagat |
47770962 |
T |
|
| Q |
175 |
aaagaagacctc |
186 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47770961 |
aaagaagacctc |
47770950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 6525440 - 6525264
Alignment:
| Q |
4 |
atacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt |
103 |
Q |
| |
|
|||||||||| ||||| || ||| | |||||||| | |||||||| || ||| || ||||| || || |||||||| | ||| |||||||||| || |
|
|
| T |
6525440 |
atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc |
6525341 |
T |
|
| Q |
104 |
ttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaa |
180 |
Q |
| |
|
||| || |||||||| || |||||||| ||||||||||| |||||||| || ||||||||| |||||||||||||| |
|
|
| T |
6525340 |
ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaa |
6525264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 47775020 - 47774840
Alignment:
| Q |
6 |
acttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
105 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| ||||||||||||| | || || | ||| || | |||||||| |||||||||||||||| | | |
|
|
| T |
47775020 |
acttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcggatattttaggattcatcccgt |
47774921 |
T |
|
| Q |
106 |
cgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc |
186 |
Q |
| |
|
|||| |||||||| || || ||||| |||||||| |||||||| || || ||||||||| |||||| |||| |||||||| |
|
|
| T |
47774920 |
cgtctaagagaatattgctagctttgagatcacggtgtataatgcggaggcgagaatcctcatgaagataaataagacctc |
47774840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 6515135 - 6515285
Alignment:
| Q |
75 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
174 |
Q |
| |
|
|||||||||| ||| |||||||||| | || || |||||||| || |||||||| ||||||||||| |||| ||| | | ||||||||| ||| |||| |
|
|
| T |
6515135 |
ccaaaatcagctatcttaggattcatccgtttatctaagagaatattgcttgctttgagatcacgatgaataacacgcactcgagaatcctcatggaggt |
6515234 |
T |
|
| Q |
175 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
225 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
6515235 |
aaagaatgcctcgagcaatacctaaaatgattgtgtagcgcctttcccaat |
6515285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 6503125 - 6503275
Alignment:
| Q |
75 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
174 |
Q |
| |
|
|||||||||| ||| |||||||||| | ||| ||||||||||| ||||||||||| ||||| | ||| |||| ||||| | |||||||||| ||||||| |
|
|
| T |
6503125 |
ccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggt |
6503224 |
T |
|
| Q |
175 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
225 |
Q |
| |
|
| |||| |||| ||||| ||| ||||||| ||||||| || |||||| |
|
|
| T |
6503225 |
atagaatgcctcgagcaatacctaaaatgattaggtagcgctttccccaat |
6503275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 11224964 - 11224684
Alignment:
| Q |
1 |
ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11224964 |
ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa |
11224865 |
T |
|
| Q |
101 |
cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11224864 |
cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca |
11224765 |
T |
|
| Q |
201 |
atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11224764 |
atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatacatacacaaaattagatattttagttg |
11224684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 28828946 - 28829193
Alignment:
| Q |
5 |
tacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaacttt |
104 |
Q |
| |
|
||||||||| |||||||| ||| || ||||||| |||| |||||||| ||||||| |||||| || || |||||||| | ||| |||| ||||| | | |
|
|
| T |
28828946 |
tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtct |
28829045 |
T |
|
| Q |
105 |
tcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaatga |
204 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||| |||||||| || ||| ||||||| | |||||| ||||||| ||||| | ||| ||| ||||| |
|
|
| T |
28829046 |
ccatctaagagaatgttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatga |
28829145 |
T |
|
| Q |
205 |
ttttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
252 |
Q |
| |
|
||||||||||| |||||||||| ||| || |||| ||| ||||||||| |
|
|
| T |
28829146 |
ttttgtagcgcttttcccaatctaattgtgctttctttgttggatcta |
28829193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28859961 - 28860184
Alignment:
| Q |
1 |
ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa |
100 |
Q |
| |
|
|||| |||||||| |||||||| | | || ||||||| |||| |||||||| | |||| |||||| || || |||||||| || || |||| ||||| |
|
|
| T |
28859961 |
ctaacacttactaggttccaacaactctacttgtatttgcttgggtttgatccaatagaattagtcttgccatgccaaaatctgaaatcttagcattcat |
28860060 |
T |
|
| Q |
101 |
cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca |
200 |
Q |
| |
|
| |||||| | ||||||||| |||||||| ||||| || ||||||||||| ||| ||||||||| |||||||||||||| |||| ||||| ||| | |
|
|
| T |
28860061 |
gtcttcgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcctcatgaaggtaaagaacgcctcgagcaataccttga |
28860160 |
T |
|
| Q |
201 |
atgattttgtagcgcctttcccaa |
224 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
28860161 |
atgattttgtagcgcttttcccaa |
28860184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 28854604 - 28854854
Alignment:
| Q |
2 |
taatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaac |
101 |
Q |
| |
|
|||||||||||| |||||||| | || ||||||| |||| |||||||| ||||||| |||||| || || || ||||| ||||| |||| ||||| |
|
|
| T |
28854604 |
taatacttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatg |
28854703 |
T |
|
| Q |
102 |
ttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaa |
201 |
Q |
| |
|
||||| || |||||||| || | |||||| |||||||| |||||||| || ||| ||||||||| |||||| || |||| ||||| ||||| ||| || |
|
|
| T |
28854704 |
ttttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcctcatgaagatagagaacacctcgagcaatacctttaa |
28854803 |
T |
|
| Q |
202 |
tgattttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
252 |
Q |
| |
|
||||||||||||| |||||||||| ||| || |||| ||| | ||||||| |
|
|
| T |
28854804 |
tgattttgtagcgtttttcccaatctaattgtgctttctttgtaggatcta |
28854854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 27368599 - 27368823
Alignment:
| Q |
6 |
acttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
105 |
Q |
| |
|
|||||||| |||||||||||| |||||||| | ||| ||||||| ||| || || | |||| || | |||||||| ||||| |||||||||| || || |
|
|
| T |
27368599 |
acttactaggttccaacgattctatttgtacttccttcagtttgaccgataacaaatcgtcttgccaatccaaaatcggatatcttaggattcatctctt |
27368698 |
T |
|
| Q |
106 |
cgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaatgat |
205 |
Q |
| |
|
|||| || ||||| || |||||||| |||||||| |||||||| || | ||||||||| ||||| ||||||||||||| ||||| ||| ||||| |
|
|
| T |
27368699 |
cgtctaaaagaatattgcttgctttgagatcacggtgtataatgcgcaagcgagaatcctcgtgaagataaagaagacctcgagcaataccttttatgat |
27368798 |
T |
|
| Q |
206 |
tttgtagcgcctttcccaatccaat |
230 |
Q |
| |
|
||||||||| ||| ||||| |||| |
|
|
| T |
27368799 |
attgtagcgcgtttgccaattcaat |
27368823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 28874531 - 28874782
Alignment:
| Q |
1 |
ctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaa |
100 |
Q |
| |
|
|||| |||||||| ||| |||| | | || ||||||| |||| |||||||| ||||||| ||||| || || |||||||| || || |||| ||||| |
|
|
| T |
28874531 |
ctaacacttactaggtttcaacaactctacttgtatttgcttgggtttgatccacaagaataagtcttgccatgccaaaatctgagatcttagcattcac |
28874630 |
T |
|
| Q |
101 |
cttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctcca |
200 |
Q |
| |
|
| |||||| ||||||||||| |||||||| ||||| || ||||||||||| ||| |||||| |||||| ||||||| |||| ||||| ||| | |
|
|
| T |
28874631 |
gtcttcgtctaagagaatgttgcttgctttgagatcgcggtgtataatacgcagtcttgaatccccatgaagataaagaacgcctcgagcaatgccttga |
28874730 |
T |
|
| Q |
201 |
atgattttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
252 |
Q |
| |
|
||||||||||||||| | |||||||| ||| || |||| || | |||||||| |
|
|
| T |
28874731 |
atgattttgtagcgcttctcccaatctaattgtgctttcttcagtggatcta |
28874782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 12425 - 12575
Alignment:
| Q |
75 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
174 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||| ||||||||||| || |||||||| ||||||||||| |||| ||| ||| ||||||||| ||||||| |
|
|
| T |
12425 |
ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt |
12524 |
T |
|
| Q |
175 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
225 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
12525 |
aaagaatgcctcgagcaatacctaaaatgattttgtagcgccttccccaat |
12575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 4804 - 4954
Alignment:
| Q |
75 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
174 |
Q |
| |
|
|||||||||| ||| |||||||||| | ||| ||||||||||| ||||||||||| ||||| | ||| |||| ||||| | |||||||||| ||||||| |
|
|
| T |
4804 |
ccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggt |
4903 |
T |
|
| Q |
175 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
225 |
Q |
| |
|
| |||| |||| ||||| ||| ||||||| ||||||| || |||||| |
|
|
| T |
4904 |
atagaatgcctcgagcaatacctaaaatgattaggtagcgctttccccaat |
4954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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